stim response

actions/stimulus-response/data/10-calculate-stimulus-response.html

@@ -13169,7 +13169,7 @@ div#notebook {
 
 
 <div class="output_subarea output_stream output_stderr output_text">
-<pre>08:31:41 [I] klustakwik KlustaKwik2 version 0.2.6
+<pre>11:36:02 [I] klustakwik KlustaKwik2 version 0.2.6
 </pre>
 </div>
 </div>
@@ -13315,13 +13315,13 @@ div#notebook {
 
  
  
-<div id="c31390dc-9698-436d-ab2a-1cbc4a5a53d7"></div>
+<div id="ab435e8e-523b-4fd6-b6b5-8138ce4c2f14"></div>
 <div class="output_subarea output_widget_view ">
 <script type="text/javascript">
-var element = $('#c31390dc-9698-436d-ab2a-1cbc4a5a53d7');
+var element = $('#ab435e8e-523b-4fd6-b6b5-8138ce4c2f14');
 </script>
 <script type="application/vnd.jupyter.widget-view+json">
-{"model_id": "d3f0400c75c745c789907bd763bf2833", "version_major": 2, "version_minor": 0}
+{"model_id": "476c31da67274b2396ed3f2ec54a8344", "version_major": 2, "version_minor": 0}
 </script>
 </div>
 
@@ -13412,20 +13412,7 @@ var element = $('#c31390dc-9698-436d-ab2a-1cbc4a5a53d7');
 <div class="prompt input_prompt">In&nbsp;[&nbsp;]:</div>
 <div class="inner_cell">
     <div class="input_area">
-<div class=" highlight hl-ipython3"><pre><span></span><span class="n">stuff</span> <span class="o">=</span> <span class="p">{</span>
-    <span class="s2">&quot;figures&quot;</span><span class="p">:</span> <span class="s2">&quot;figures&quot;</span><span class="p">,</span>
-<span class="c1">#     &quot;statistics&quot;: &quot;statistics&quot;</span>
-<span class="p">}</span>
-
-<span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">stuff</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
-    <span class="n">action</span><span class="o">.</span><span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">value</span>
-    <span class="n">data_path</span> <span class="o">=</span> <span class="n">action</span><span class="o">.</span><span class="n">data_path</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
-    <span class="n">data_path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
-    <span class="n">source</span> <span class="o">=</span> <span class="n">output</span> <span class="o">/</span> <span class="n">value</span>
-    <span class="k">if</span> <span class="n">source</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
-        <span class="n">shutil</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">source</span><span class="p">,</span> <span class="n">data_path</span><span class="p">)</span>
-    <span class="k">else</span><span class="p">:</span>
-        <span class="n">copy_tree</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">source</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">data_path</span><span class="p">))</span>
+<div class=" highlight hl-ipython3"><pre><span></span><span class="n">copy_tree</span><span class="p">(</span><span class="n">output</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">action</span><span class="o">.</span><span class="n">data_path</span><span class="p">()))</span>
 </pre></div>
 
     </div>
@@ -13445,6 +13432,19 @@ var element = $('#c31390dc-9698-436d-ab2a-1cbc4a5a53d7');
 </div>
 </div>
 
+</div>
+<div class="cell border-box-sizing code_cell rendered">
+<div class="input">
+<div class="prompt input_prompt">In&nbsp;[&nbsp;]:</div>
+<div class="inner_cell">
+    <div class="input_area">
+<div class=" highlight hl-ipython3"><pre><span></span> 
+</pre></div>
+
+    </div>
+</div>
+</div>
+
 </div>
     </div>
   </div>

actions/stimulus-response/data/10-calculate-stimulus-response.ipynb

@@ -19,7 +19,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "08:31:41 [I] klustakwik KlustaKwik2 version 0.2.6\n"
+      "11:36:02 [I] klustakwik KlustaKwik2 version 0.2.6\n"
      ]
     }
    ],
@@ -148,12 +148,12 @@
     {
      "data": {
       "application/vnd.jupyter.widget-view+json": {
-       "model_id": "d3f0400c75c745c789907bd763bf2833",
+       "model_id": "476c31da67274b2396ed3f2ec54a8344",
        "version_major": 2,
        "version_minor": 0
       },
       "text/plain": [
-       "HBox(children=(IntProgress(value=0, max=1281), HTML(value='')))"
+       "HBox(children=(IntProgress(value=0, max=1298), HTML(value='')))"
       ]
      },
      "metadata": {},
@@ -230,20 +230,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "stuff = {\n",
-    "    \"figures\": \"figures\",\n",
-    "#     \"statistics\": \"statistics\"\n",
-    "}\n",
-    "\n",
-    "for key, value in stuff.items():\n",
-    "    action.data[key] = value\n",
-    "    data_path = action.data_path(key)\n",
-    "    data_path.parent.mkdir(exist_ok=True, parents=True)\n",
-    "    source = output / value\n",
-    "    if source.is_file():\n",
-    "        shutil.copy(source, data_path)\n",
-    "    else:\n",
-    "        copy_tree(str(source), str(data_path))"
+    "copy_tree(output, str(action.data_path()))"
    ]
   },
   {
@@ -254,6 +241,13 @@
    "source": [
     "septum_mec.analysis.registration.store_notebook(action, \"10-calculate-stimulus-response.ipynb\")"
    ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
   }
  ],
  "metadata": {