2019-10-17 17:50:31 +00:00
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{
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"cells": [
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{
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"cell_type": "code",
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2021-03-10 12:30:50 +00:00
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"execution_count": null,
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2019-10-17 17:50:31 +00:00
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"metadata": {},
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"outputs": [],
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"source": [
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"%load_ext autoreload\n",
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"%autoreload 2"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 2,
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"metadata": {},
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2021-03-10 12:30:50 +00:00
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"outputs": [],
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2019-10-17 17:50:31 +00:00
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"source": [
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"import os\n",
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"import expipe\n",
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"import pathlib\n",
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"import numpy as np\n",
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"import spatial_maps.stats as stats\n",
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"import septum_mec\n",
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"import septum_mec.analysis.data_processing as dp\n",
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"import septum_mec.analysis.registration\n",
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"import head_direction.head as head\n",
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"import spatial_maps as sp\n",
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"import speed_cells.speed as spd\n",
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"import re\n",
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"import joblib\n",
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"import multiprocessing\n",
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"import shutil\n",
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"import psutil\n",
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"import pandas as pd\n",
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"import matplotlib.pyplot as plt\n",
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"import matplotlib\n",
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2021-03-10 12:30:50 +00:00
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"import seaborn as sns\n",
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2019-10-17 17:50:31 +00:00
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"from distutils.dir_util import copy_tree\n",
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"from neo import SpikeTrain\n",
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"import scipy\n",
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"\n",
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2019-12-13 10:43:57 +00:00
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"from tqdm.notebook import tqdm_notebook as tqdm\n",
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"tqdm.pandas()\n",
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2019-10-17 17:50:31 +00:00
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"\n",
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2021-03-10 12:30:50 +00:00
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"from septum_mec.analysis.statistics import load_data_frames, make_paired_tables, make_statistics_table\n",
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2019-10-17 17:50:31 +00:00
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"\n",
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"from spikewaveform.core import calculate_waveform_features_from_template, cluster_waveform_features\n",
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"\n",
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2019-10-22 10:22:00 +00:00
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"from septum_mec.analysis.plotting import violinplot, despine"
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2019-10-17 17:50:31 +00:00
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]
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},
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{
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"cell_type": "code",
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"execution_count": 3,
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"metadata": {},
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"outputs": [],
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"source": [
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"%matplotlib inline\n",
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"plt.rc('axes', titlesize=12)\n",
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"plt.rcParams.update({\n",
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" 'font.size': 12, \n",
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" 'figure.figsize': (6, 4), \n",
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" 'figure.dpi': 150\n",
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"})\n",
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"\n",
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"output_path = pathlib.Path(\"output\") / \"stimulus-response\"\n",
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"(output_path / \"statistics\").mkdir(exist_ok=True, parents=True)\n",
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"(output_path / \"figures\").mkdir(exist_ok=True, parents=True)\n",
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"output_path.mkdir(exist_ok=True)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 4,
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"metadata": {},
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"outputs": [],
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"source": [
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2021-03-10 12:30:50 +00:00
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"project_path = dp.project_path()\n",
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"project = expipe.get_project(project_path)\n",
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"actions = project.actions"
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2019-10-17 17:50:31 +00:00
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]
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},
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{
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"cell_type": "code",
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"execution_count": 5,
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"metadata": {},
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"outputs": [],
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"source": [
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"colors = ['#d95f02','#e7298a']\n",
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"labels = ['11 Hz', '30 HZ']\n",
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2021-03-10 12:30:50 +00:00
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"queries = ['frequency==11 and stim_location==\"ms\"', 'frequency==30 and stim_location==\"ms\"']"
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2019-10-17 17:50:31 +00:00
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]
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},
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{
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"cell_type": "code",
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2021-03-10 12:30:50 +00:00
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"execution_count": 6,
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2019-10-22 10:22:00 +00:00
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"metadata": {},
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2019-10-17 17:50:31 +00:00
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"outputs": [
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{
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"name": "stdout",
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"output_type": "stream",
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"text": [
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2019-10-22 10:22:00 +00:00
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"Number of sessions above threshold 194\n",
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2021-03-10 12:30:50 +00:00
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"Number of animals 4\n",
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"Number of individual gridcells 139\n",
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"Number of gridcell recordings 230\n"
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2019-10-17 17:50:31 +00:00
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]
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}
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],
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"source": [
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2021-03-10 12:30:50 +00:00
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"data, labels, colors, queries = load_data_frames(queries, labels, colors)"
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2019-10-17 17:50:31 +00:00
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]
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},
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{
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"cell_type": "code",
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2021-03-10 12:30:50 +00:00
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"execution_count": 7,
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2019-10-17 17:50:31 +00:00
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"metadata": {},
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"outputs": [],
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"source": [
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2021-03-10 12:30:50 +00:00
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"keys = [\n",
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" 't_i_peak',\n",
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" 't_e_peak',\n",
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" 'p_i_peak',\n",
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" 'p_e_peak',\n",
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"]"
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2019-10-17 17:50:31 +00:00
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]
|
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},
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{
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"cell_type": "code",
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2021-03-10 12:30:50 +00:00
|
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"execution_count": 8,
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2019-12-13 10:43:57 +00:00
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"metadata": {},
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"outputs": [],
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"source": [
|
2021-03-10 12:30:50 +00:00
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"results, labels = make_paired_tables(data, keys, queries=queries, labels=labels)"
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2019-12-13 10:43:57 +00:00
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]
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},
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{
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"cell_type": "code",
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2021-03-10 12:30:50 +00:00
|
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"execution_count": 9,
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2019-12-13 10:43:57 +00:00
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"metadata": {},
|
2019-10-17 17:50:31 +00:00
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"outputs": [
|
2019-10-22 10:22:00 +00:00
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{
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"data": {
|
2021-03-10 12:30:50 +00:00
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"image/png": "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2019-10-22 10:22:00 +00:00
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"text/plain": [
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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"metadata": {
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"needs_background": "light"
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},
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"output_type": "display_data"
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-22 10:22:00 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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2021-03-10 12:30:50 +00:00
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2019-10-22 10:22:00 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-22 10:22:00 +00:00
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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2021-03-10 12:30:50 +00:00
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2019-10-22 10:22:00 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-22 10:22:00 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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2021-03-10 12:30:50 +00:00
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2019-10-22 10:22:00 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-22 10:22:00 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-22 10:22:00 +00:00
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]
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},
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2019-10-17 17:50:31 +00:00
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-17 17:50:31 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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"metadata": {
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},
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"output_type": "display_data"
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-17 17:50:31 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-17 17:50:31 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-17 17:50:31 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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2021-03-10 12:30:50 +00:00
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2019-10-17 17:50:31 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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},
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"output_type": "display_data"
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-17 17:50:31 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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"data": {
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2021-03-10 12:30:50 +00:00
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2019-10-17 17:50:31 +00:00
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"text/plain": [
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2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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"output_type": "display_data"
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},
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{
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"data": {
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2021-03-10 12:30:50 +00:00
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"image/png": "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
|
2019-10-17 17:50:31 +00:00
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"text/plain": [
|
2021-03-10 12:30:50 +00:00
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"<Figure size 555x330 with 1 Axes>"
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2019-10-17 17:50:31 +00:00
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]
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},
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"metadata": {
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"needs_background": "light"
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},
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"output_type": "display_data"
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}
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],
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"source": [
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"\n",
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"xlabel = {\n",
|
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|
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" 't_i_peak': 's',\n",
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" 't_e_peak': 's',\n",
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" 'p_i_peak': 'prob',\n",
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" 'p_e_peak': 'prob',\n",
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"}\n",
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"\n",
|
2019-10-22 10:22:00 +00:00
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|
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"for cell_type in ['gridcell', 'bs_not_gridcell', 'ns_inhibited', 'ns_not_inhibited']:\n",
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2021-03-10 12:30:50 +00:00
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|
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" for key in xlabel:\n",
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|
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" fig = plt.figure(figsize=(3.7,2.2))\n",
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2019-10-17 17:50:31 +00:00
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|
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" plt.suptitle(key + ' ' + cell_type)\n",
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|
|
|
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" legend_lines = []\n",
|
2021-03-10 12:30:50 +00:00
|
|
|
" for color, label in zip(colors, labels):\n",
|
|
|
|
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" legend_lines.append(matplotlib.lines.Line2D([0], [0], color=color, label=label))\n",
|
|
|
|
|
" sns.kdeplot(data=results[cell_type][key].loc[:,labels], cumulative=True, legend=False, palette=colors, common_norm=False)\n",
|
2019-10-17 17:50:31 +00:00
|
|
|
" plt.xlabel(xlabel[key])\n",
|
|
|
|
|
" plt.legend(\n",
|
|
|
|
|
" handles=legend_lines,\n",
|
|
|
|
|
" bbox_to_anchor=(1.04,1), borderaxespad=0, frameon=False)\n",
|
|
|
|
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" plt.tight_layout()\n",
|
|
|
|
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" plt.grid(False)\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" despine()\n",
|
2019-10-17 17:50:31 +00:00
|
|
|
" figname = f'histogram-{key}-{cell_type}'.replace(' ', '-')\n",
|
|
|
|
|
" fig.savefig(\n",
|
|
|
|
|
" output_path / 'figures' / f'{figname}.png', \n",
|
|
|
|
|
" bbox_inches='tight', transparent=True)\n",
|
|
|
|
|
" fig.savefig(\n",
|
|
|
|
|
" output_path / 'figures' / f'{figname}.svg', \n",
|
|
|
|
|
" bbox_inches='tight', transparent=True)"
|
|
|
|
|
]
|
|
|
|
|
},
|
2021-03-10 12:30:50 +00:00
|
|
|
{
|
|
|
|
|
"cell_type": "markdown",
|
|
|
|
|
"metadata": {},
|
|
|
|
|
"source": [
|
|
|
|
|
"# Stats"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
|
|
|
|
"execution_count": null,
|
|
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [],
|
|
|
|
|
"source": [
|
|
|
|
|
"stats = {}\n",
|
|
|
|
|
"for cell_type, result in results.items():\n",
|
|
|
|
|
" stats[cell_type], _ = make_statistics_table(result, labels, lmm_test=True, wilcoxon_test=False, ttest_ind_test=True, ttest_rel_test=True)"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
|
|
|
|
"execution_count": null,
|
|
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [],
|
|
|
|
|
"source": [
|
|
|
|
|
"stats['gridcell']"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
|
|
|
|
"execution_count": null,
|
|
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [],
|
|
|
|
|
"source": [
|
|
|
|
|
"for cell_type, stat in stats.items():\n",
|
|
|
|
|
" stat.to_latex(output_path / \"statistics\" / f\"statistics_{cell_type}.tex\")\n",
|
|
|
|
|
" stat.to_csv(output_path / \"statistics\" / f\"statistics_{cell_type}.csv\")"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
|
|
|
|
"execution_count": 13,
|
|
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [],
|
|
|
|
|
"source": [
|
|
|
|
|
"for cell_type, cell_results in results.items():\n",
|
|
|
|
|
" for key, result in cell_results.items():\n",
|
|
|
|
|
" result.to_latex(output_path / \"statistics\" / f\"values_{cell_type}_{key}.tex\")\n",
|
|
|
|
|
" result.to_csv(output_path / \"statistics\" / f\"values_{cell_type}_{key}.csv\")"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "markdown",
|
|
|
|
|
"metadata": {},
|
|
|
|
|
"source": [
|
|
|
|
|
"# Plot PSTH"
|
|
|
|
|
]
|
|
|
|
|
},
|
2019-10-17 17:50:31 +00:00
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
2021-03-10 12:30:50 +00:00
|
|
|
"execution_count": 14,
|
2019-10-17 17:50:31 +00:00
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [],
|
|
|
|
|
"source": [
|
|
|
|
|
"from septum_mec.analysis.plotting import plot_bootstrap_timeseries"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
2021-03-10 12:30:50 +00:00
|
|
|
"execution_count": 15,
|
2019-10-17 17:50:31 +00:00
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [],
|
|
|
|
|
"source": [
|
|
|
|
|
"psth = pd.read_feather(output_path / 'data' / 'psth.feather')\n",
|
|
|
|
|
"times = pd.read_feather(output_path / 'data' / 'times.feather')"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
2021-03-10 12:30:50 +00:00
|
|
|
"execution_count": 16,
|
2019-10-17 17:50:31 +00:00
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [],
|
|
|
|
|
"source": [
|
|
|
|
|
"times = times.T.iloc[0].values"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
2021-03-10 12:30:50 +00:00
|
|
|
"execution_count": 17,
|
2019-10-17 17:50:31 +00:00
|
|
|
"metadata": {},
|
2019-10-22 10:22:00 +00:00
|
|
|
"outputs": [
|
|
|
|
|
{
|
|
|
|
|
"data": {
|
2021-03-10 12:30:50 +00:00
|
|
|
"image/png": "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
|
2019-10-22 10:22:00 +00:00
|
|
|
"text/plain": [
|
|
|
|
|
"<Figure size 750x300 with 2 Axes>"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
"metadata": {
|
|
|
|
|
"needs_background": "light"
|
|
|
|
|
},
|
|
|
|
|
"output_type": "display_data"
|
|
|
|
|
}
|
|
|
|
|
],
|
2019-10-17 17:50:31 +00:00
|
|
|
"source": [
|
2019-12-13 10:43:57 +00:00
|
|
|
"cs = ['#993404', '#980043', '#d95f02', '#e7298a']\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
"lb = ['GC 11 Hz', 'GC 30 Hz', 'NSI 11 Hz', 'NSI 30 Hz']\n",
|
|
|
|
|
"\n",
|
|
|
|
|
"fig, axs = plt.subplots(1, 2, sharex=True, sharey=True, figsize=(5,2))\n",
|
|
|
|
|
"ii = 0\n",
|
|
|
|
|
"for cell_type, ls in zip(['gridcell', 'ns_inhibited'], ['-', '--']):\n",
|
|
|
|
|
" for i, (ax, query) in enumerate(zip(axs.ravel(), queries)):\n",
|
|
|
|
|
" selection = [\n",
|
|
|
|
|
" f'{r.action}_{r.channel_group}_{r.unit_name}' \n",
|
|
|
|
|
" for i, r in data.query(query + ' and ' + cell_type).iterrows()]\n",
|
|
|
|
|
" values = psth.loc[:, selection].dropna(axis=1).to_numpy()\n",
|
|
|
|
|
"\n",
|
|
|
|
|
" plot_bootstrap_timeseries(times*1000, values, ax=ax, lw=2, label=lb[ii], color=cs[ii], ls=ls)\n",
|
|
|
|
|
" # ax.set_title(titles[i])\n",
|
|
|
|
|
" ax.set_xlabel('Time (ms)')\n",
|
|
|
|
|
" ax.legend(frameon=False)\n",
|
|
|
|
|
" ii += 1\n",
|
|
|
|
|
" axs[0].set_ylabel('Probability density')\n",
|
|
|
|
|
" despine()\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" plt.xlim(-5, 30)\n",
|
2021-03-10 12:30:50 +00:00
|
|
|
"for ax in axs.ravel():\n",
|
|
|
|
|
" ax.axvspan(0, 5, color='#43a2ca', alpha=.3, zorder=-5)\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
"figname = f'response-probability-gc-ns'\n",
|
|
|
|
|
"fig.savefig(\n",
|
|
|
|
|
" output_path / 'figures' / f'{figname}.png', \n",
|
|
|
|
|
" bbox_inches='tight', transparent=True)\n",
|
|
|
|
|
"fig.savefig(\n",
|
|
|
|
|
" output_path / 'figures' / f'{figname}.svg', \n",
|
|
|
|
|
" bbox_inches='tight', transparent=True)"
|
2019-10-17 17:50:31 +00:00
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
{
|
|
|
|
|
"cell_type": "code",
|
2021-03-10 12:30:50 +00:00
|
|
|
"execution_count": 18,
|
2019-10-17 17:50:31 +00:00
|
|
|
"metadata": {},
|
|
|
|
|
"outputs": [
|
|
|
|
|
{
|
|
|
|
|
"data": {
|
2021-03-10 12:30:50 +00:00
|
|
|
"image/png": "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
|
2019-10-17 17:50:31 +00:00
|
|
|
"text/plain": [
|
|
|
|
|
"<Figure size 750x300 with 2 Axes>"
|
|
|
|
|
]
|
|
|
|
|
},
|
|
|
|
|
"metadata": {
|
|
|
|
|
"needs_background": "light"
|
|
|
|
|
},
|
|
|
|
|
"output_type": "display_data"
|
|
|
|
|
}
|
|
|
|
|
],
|
|
|
|
|
"source": [
|
2019-12-13 10:43:57 +00:00
|
|
|
"cs = ['#d95f02', '#e7298a', '#993404', '#980043']\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
"lb = ['NSI 11 Hz', 'NSI 30 Hz', 'NS 11 Hz', 'NS 30 Hz']\n",
|
|
|
|
|
"\n",
|
2019-10-17 17:50:31 +00:00
|
|
|
"fig, axs = plt.subplots(1, 2, sharex=True, sharey=True, figsize=(5,2))\n",
|
|
|
|
|
"ii = 0\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
"for cell_type, ls in zip(['ns_inhibited', 'ns_not_inhibited'], ['--', '-']):\n",
|
2019-10-17 17:50:31 +00:00
|
|
|
" for i, (ax, query) in enumerate(zip(axs.ravel(), queries)):\n",
|
|
|
|
|
" selection = [\n",
|
|
|
|
|
" f'{r.action}_{r.channel_group}_{r.unit_name}' \n",
|
|
|
|
|
" for i, r in data.query(query + ' and ' + cell_type).iterrows()]\n",
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" values = psth.loc[:, selection].dropna(axis=1).to_numpy()\n",
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"\n",
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2019-10-22 10:22:00 +00:00
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" plot_bootstrap_timeseries(times*1000, values, ax=ax, lw=2, label=lb[ii], color=cs[ii], ls=ls)\n",
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2019-10-17 17:50:31 +00:00
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" # ax.set_title(titles[i])\n",
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2019-10-22 10:22:00 +00:00
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" ax.set_xlabel('Time (ms)')\n",
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2019-10-17 17:50:31 +00:00
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" ax.legend(frameon=False)\n",
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" ii += 1\n",
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" axs[0].set_ylabel('Probability density')\n",
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2019-10-22 10:22:00 +00:00
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" despine()\n",
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2019-12-13 10:43:57 +00:00
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" plt.xlim(-5, 30)\n",
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2021-03-10 12:30:50 +00:00
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"for ax in axs.ravel():\n",
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" ax.axvspan(0, 5, color='#43a2ca', alpha=.3, zorder=-5)\n",
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2019-10-22 10:22:00 +00:00
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"figname = f'response-probability-nsi-ns'\n",
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2019-10-17 17:50:31 +00:00
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"fig.savefig(\n",
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" output_path / 'figures' / f'{figname}.png', \n",
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" bbox_inches='tight', transparent=True)\n",
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"fig.savefig(\n",
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" output_path / 'figures' / f'{figname}.svg', \n",
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" bbox_inches='tight', transparent=True)"
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]
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},
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2019-12-13 10:43:57 +00:00
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": []
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},
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2019-10-17 17:50:31 +00:00
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{
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"cell_type": "markdown",
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"metadata": {},
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"source": [
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"# Store results in Expipe action"
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]
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},
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{
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"cell_type": "code",
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2021-03-10 12:30:50 +00:00
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"execution_count": 19,
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2019-10-17 17:50:31 +00:00
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"metadata": {},
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"outputs": [],
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"source": [
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"action = project.require_action(\"stimulus-response\")"
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]
|
2019-10-22 10:22:00 +00:00
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},
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{
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"cell_type": "code",
|
2021-03-10 12:30:50 +00:00
|
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|
"execution_count": 20,
|
2019-10-22 10:22:00 +00:00
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"metadata": {},
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"outputs": [
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{
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"data": {
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"text/plain": [
|
2021-03-10 12:30:50 +00:00
|
|
|
"['/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_p_i_peak.tex',\n",
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_t_i_peak.csv',\n",
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_t_i_peak.csv',\n",
|
|
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_p_e_peak.tex',\n",
|
|
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|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_p_i_peak.csv',\n",
|
|
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|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_gridcell.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_t_e_peak.tex',\n",
|
|
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_p_i_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_ns_inhibited.tex',\n",
|
|
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|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_t_e_peak.tex',\n",
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_bs.csv',\n",
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_t_i_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_p_e_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_p_e_peak.tex',\n",
|
|
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_t_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_t_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_p_i_peak.tex',\n",
|
|
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|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_gridcell.tex',\n",
|
|
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|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_p_e_peak.csv',\n",
|
|
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_t_i_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_p_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_p_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_t_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_p_i_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_bs_not_gridcell.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_bs.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_t_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_p_i_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_t_e_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_t_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_t_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_p_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_t_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_t_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_t_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_p_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_p_e_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_p_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_t_i_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_not_inhibited_t_e_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_t_e_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_ns_not_inhibited.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_ns_inhibited.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_gridcell_p_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_ns_not_inhibited.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_p_i_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_p_e_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/statistics_bs_not_gridcell.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_ns_inhibited_t_i_peak.tex',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/statistics/values_bs_not_gridcell_p_e_peak.csv',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/data/times.feather',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/data/psth.feather',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-gridcell-stim-mec.png',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_inhibited-stim-mec.png',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_inhibited.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-bs_not_gridcell.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_not_inhibited.png',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-bs_not_gridcell-stim-mec.png',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-nsi-ns.png',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-gridcell-stim-mec.png',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-nsi-ns-stim-mec.png',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_not_inhibited-stim-mec.png',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-gridcell.svg',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_not_inhibited-stim-mec.png',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_inhibited-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_inhibited.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_inhibited.png',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_not_inhibited-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_not_inhibited.svg',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_not_inhibited-stim-mec.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-bs_not_gridcell-stim-mec.png',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-bs_not_gridcell-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-bs_not_gridcell.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-gridcell.svg',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-bs_not_gridcell-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_inhibited.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_not_inhibited.png',\n",
|
2019-12-13 10:43:57 +00:00
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-gridcell-stim-mec.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-nsi-ns-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_inhibited.png',\n",
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-bs_not_gridcell.png',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-bs_not_gridcell.png',\n",
|
2019-12-13 10:43:57 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-gridcell-stim-mec.svg',\n",
|
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_inhibited-stim-mec.png',\n",
|
2019-10-22 10:22:00 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-gc-ns.png',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-bs_not_gridcell.png',\n",
|
2019-12-13 10:43:57 +00:00
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_not_inhibited-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_not_inhibited.svg',\n",
|
|
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|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-gridcell.png',\n",
|
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|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-nsi-ns.svg',\n",
|
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-gridcell.png',\n",
|
2019-12-13 10:43:57 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-gc-ns-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-gridcell.png',\n",
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-gc-ns.svg',\n",
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-gridcell.svg',\n",
|
2019-12-13 10:43:57 +00:00
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_not_inhibited-stim-mec.png',\n",
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_inhibited-stim-mec.svg',\n",
|
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|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-gridcell-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_inhibited.svg',\n",
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|
|
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|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_not_inhibited.svg',\n",
|
2019-12-13 10:43:57 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-gridcell-stim-mec.png',\n",
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_inhibited-stim-mec.png',\n",
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2019-10-22 10:22:00 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-bs_not_gridcell.svg',\n",
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-bs_not_gridcell.svg',\n",
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2019-12-13 10:43:57 +00:00
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-bs_not_gridcell-stim-mec.png',\n",
|
|
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-bs_not_gridcell-stim-mec.svg',\n",
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2019-10-22 10:22:00 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-gridcell.png',\n",
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2019-12-13 10:43:57 +00:00
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/response-probability-gc-ns-stim-mec.png',\n",
|
2019-10-22 10:22:00 +00:00
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-bs_not_gridcell.png',\n",
|
|
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_inhibited.png',\n",
|
2019-12-13 10:43:57 +00:00
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-gridcell-stim-mec.png',\n",
|
|
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-gridcell-stim-mec.svg',\n",
|
|
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_inhibited-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_not_inhibited.png',\n",
|
2019-12-13 10:43:57 +00:00
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_not_inhibited-stim-mec.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-bs_not_gridcell-stim-mec.svg',\n",
|
|
|
|
|
" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_not_inhibited-stim-mec.png',\n",
|
|
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_inhibited-stim-mec.svg',\n",
|
2019-10-22 10:22:00 +00:00
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-gridcell.svg',\n",
|
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|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_e_peak-ns_not_inhibited.svg',\n",
|
2019-12-13 10:43:57 +00:00
|
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-bs_not_gridcell-stim-mec.png',\n",
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2019-10-22 10:22:00 +00:00
|
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_e_peak-ns_not_inhibited.png',\n",
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2019-12-13 10:43:57 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-p_i_peak-ns_inhibited-stim-mec.png',\n",
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2019-10-22 10:22:00 +00:00
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" '/media/storage/expipe/septum-mec/actions/stimulus-response/data/figures/histogram-t_i_peak-ns_inhibited.png']"
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]
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},
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2021-03-10 12:30:50 +00:00
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"execution_count": 20,
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2019-10-22 10:22:00 +00:00
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"metadata": {},
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"output_type": "execute_result"
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}
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],
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"source": [
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"copy_tree(output_path, str(action.data_path()))"
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]
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},
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{
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"cell_type": "code",
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2021-03-10 12:30:50 +00:00
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"execution_count": 21,
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2019-10-22 10:22:00 +00:00
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"metadata": {},
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"outputs": [],
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"source": [
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"septum_mec.analysis.registration.store_notebook(action, \"20_stimulus-spike-response.ipynb\")"
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]
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},
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2021-03-10 12:30:50 +00:00
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": []
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},
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2019-10-22 10:22:00 +00:00
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {},
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"outputs": [],
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"source": []
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2019-10-17 17:50:31 +00:00
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}
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],
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"metadata": {
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"kernelspec": {
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"display_name": "Python 3",
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"language": "python",
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"name": "python3"
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},
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"language_info": {
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"codemirror_mode": {
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"name": "ipython",
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"version": 3
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},
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"file_extension": ".py",
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"mimetype": "text/x-python",
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"name": "python",
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"nbconvert_exporter": "python",
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"pygments_lexer": "ipython3",
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"version": "3.6.8"
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}
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},
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"nbformat": 4,
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2021-03-10 12:30:50 +00:00
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"nbformat_minor": 4
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2019-10-17 17:50:31 +00:00
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}
|
