From cc82e736c151956232d62e3047e6c4e368d487da Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Mikkel=20Elle=20Lepper=C3=B8d?= <lep.mik@gmail.com>
Date: Tue, 8 Oct 2019 15:32:28 +0200
Subject: [PATCH] auto commit actions/1834-120319-2

---
 actions/1834-120319-2/attributes.yaml         |   14 +
 .../Rhythm_FPGA-100.0/continuous.dat          |    3 +
 .../Rhythm_FPGA-100.0/timestamps.npy          |    3 +
 .../TEXT_group_1/channels.npy                 |    3 +
 .../TEXT_group_1/text.npy                     |    3 +
 .../TEXT_group_1/timestamps.npy               |    3 +
 .../TTL_1/channel_states.npy                  |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/channels.npy      |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/full_words.npy    |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/timestamps.npy    |    3 +
 .../Sync_Port-115.0/TTL_1/channel_states.npy  |    3 +
 .../events/Sync_Port-115.0/TTL_1/channels.npy |    3 +
 .../Sync_Port-115.0/TTL_1/full_words.npy      |    3 +
 .../Sync_Port-115.0/TTL_1/timestamps.npy      |    3 +
 .../BINARY_group_1/channels.npy               |    3 +
 .../BINARY_group_1/data_array.npy             |    3 +
 .../BINARY_group_1/metadata.npy               |    3 +
 .../BINARY_group_1/timestamps.npy             |    3 +
 .../BINARY_group_2/channels.npy               |    3 +
 .../BINARY_group_2/data_array.npy             |    3 +
 .../BINARY_group_2/metadata.npy               |    3 +
 .../BINARY_group_2/timestamps.npy             |    3 +
 .../spike_group_1/metadata.npy                |    3 +
 .../spike_group_1/spike_clusters.npy          |    3 +
 .../spike_group_1/spike_electrode_indices.npy |    3 +
 .../spike_group_1/spike_times.npy             |    3 +
 .../spike_group_1/spike_waveforms.npy         |    3 +
 .../2/experiment1/recording1/structure.oebin  |  686 ++++
 .../experiment1/recording1/sync_messages.txt  |    2 +
 .../main.exdir/acquisition/2/settings.xml     | 3013 +++++++++++++++++
 .../data/main.exdir/attributes.yaml           |    4 +
 .../data/main.exdir/epochs/exdir.yaml         |    3 +
 .../epochs/open-ephys-epochs/exdir.yaml       |    3 +
 .../rhythm_fpga_100/attributes.yaml           |    3 +
 .../rhythm_fpga_100/data/attributes.yaml      |    1 +
 .../rhythm_fpga_100/data/data.npy             |    3 +
 .../rhythm_fpga_100/data/exdir.yaml           |    3 +
 .../rhythm_fpga_100/durations/attributes.yaml |    2 +
 .../rhythm_fpga_100/durations/data.npy        |    3 +
 .../rhythm_fpga_100/durations/exdir.yaml      |    6 +
 .../rhythm_fpga_100/exdir.yaml                |    3 +
 .../timestamps/attributes.yaml                |    2 +
 .../rhythm_fpga_100/timestamps/data.npy       |    3 +
 .../rhythm_fpga_100/timestamps/exdir.yaml     |    6 +
 .../1834-120319-2/data/main.exdir/exdir.yaml  |    3 +
 .../data/main.exdir/general/exdir.yaml        |    3 +
 .../main.exdir/general/subject/exdir.yaml     |    3 +
 .../electrophysiology/attributes.yaml         |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
 .../Clustering/cluster_nums/exdir.yaml        |    3 +
 .../channel_group_0/Clustering/exdir.yaml     |    3 +
 .../Clustering/nums/attributes.yaml           |    1 +
 .../channel_group_0/Clustering/nums/data.npy  |    3 +
 .../Clustering/nums/exdir.yaml                |    3 +
 .../Clustering/timestamps/attributes.yaml     |    4 +
 .../Clustering/timestamps/data.npy            |    3 +
 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_0/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
 .../waveform_timeseries/data/attributes.yaml  |    7 +
 .../waveform_timeseries/data/data.npy         |    3 +
 .../waveform_timeseries/data/exdir.yaml       |    3 +
 .../waveform_timeseries/exdir.yaml            |    3 +
 .../timestamps/attributes.yaml                |    4 +
 .../waveform_timeseries/timestamps/data.npy   |    3 +
 .../waveform_timeseries/timestamps/exdir.yaml |    6 +
 .../LFP/LFP_timeseries_0/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_0/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_0/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_0/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_0/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_1/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_1/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_1/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_1/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_1/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_2/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_2/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_2/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_2/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_2/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_3/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_3/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_3/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_3/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_3/exdir.yaml           |    3 +
 .../channel_group_0/LFP/exdir.yaml            |    3 +
 .../UnitTimes/39/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/39/exdir.yaml   |    3 +
 .../UnitTimes/39/times/attributes.yaml        |    1 +
 .../UnitTimes/39/times/data.npy               |    3 +
 .../UnitTimes/39/times/exdir.yaml             |    6 +
 .../channel_group_0/UnitTimes/exdir.yaml      |    3 +
 .../channel_group_0/attributes.yaml           |   20 +
 .../channel_group_0/exdir.yaml                |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
 .../Clustering/cluster_nums/exdir.yaml        |    3 +
 .../channel_group_1/Clustering/exdir.yaml     |    3 +
 .../Clustering/nums/attributes.yaml           |    1 +
 .../channel_group_1/Clustering/nums/data.npy  |    3 +
 .../Clustering/nums/exdir.yaml                |    3 +
 .../Clustering/timestamps/attributes.yaml     |    4 +
 .../Clustering/timestamps/data.npy            |    3 +
 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_1/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
 .../waveform_timeseries/data/attributes.yaml  |    7 +
 .../waveform_timeseries/data/data.npy         |    3 +
 .../waveform_timeseries/data/exdir.yaml       |    3 +
 .../waveform_timeseries/exdir.yaml            |    3 +
 .../timestamps/attributes.yaml                |    4 +
 .../waveform_timeseries/timestamps/data.npy   |    3 +
 .../waveform_timeseries/timestamps/exdir.yaml |    6 +
 .../LFP/LFP_timeseries_4/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_4/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_4/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_4/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_4/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_5/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_5/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_5/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_5/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_5/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_6/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_6/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_6/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_6/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_6/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_7/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_7/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_7/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_7/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_7/exdir.yaml           |    3 +
 .../channel_group_1/LFP/exdir.yaml            |    3 +
 .../UnitTimes/41/attributes.yaml              |    3 +
 .../channel_group_1/UnitTimes/41/exdir.yaml   |    3 +
 .../UnitTimes/41/times/attributes.yaml        |    1 +
 .../UnitTimes/41/times/data.npy               |    3 +
 .../UnitTimes/41/times/exdir.yaml             |    6 +
 .../channel_group_1/UnitTimes/exdir.yaml      |    3 +
 .../channel_group_1/attributes.yaml           |   20 +
 .../channel_group_1/exdir.yaml                |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
 .../Clustering/cluster_nums/exdir.yaml        |    3 +
 .../channel_group_2/Clustering/exdir.yaml     |    3 +
 .../Clustering/nums/attributes.yaml           |    1 +
 .../channel_group_2/Clustering/nums/data.npy  |    3 +
 .../Clustering/nums/exdir.yaml                |    3 +
 .../Clustering/timestamps/attributes.yaml     |    4 +
 .../Clustering/timestamps/data.npy            |    3 +
 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_2/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
 .../waveform_timeseries/data/attributes.yaml  |    7 +
 .../waveform_timeseries/data/data.npy         |    3 +
 .../waveform_timeseries/data/exdir.yaml       |    3 +
 .../waveform_timeseries/exdir.yaml            |    3 +
 .../timestamps/attributes.yaml                |    4 +
 .../waveform_timeseries/timestamps/data.npy   |    3 +
 .../waveform_timeseries/timestamps/exdir.yaml |    6 +
 .../LFP/LFP_timeseries_10/attributes.yaml     |   13 +
 .../LFP_timeseries_10/data/attributes.yaml    |    6 +
 .../LFP/LFP_timeseries_10/data/data.npy       |    3 +
 .../LFP/LFP_timeseries_10/data/exdir.yaml     |    3 +
 .../LFP/LFP_timeseries_10/exdir.yaml          |    3 +
 .../LFP/LFP_timeseries_11/attributes.yaml     |   13 +
 .../LFP_timeseries_11/data/attributes.yaml    |    6 +
 .../LFP/LFP_timeseries_11/data/data.npy       |    3 +
 .../LFP/LFP_timeseries_11/data/exdir.yaml     |    3 +
 .../LFP/LFP_timeseries_11/exdir.yaml          |    3 +
 .../LFP/LFP_timeseries_9/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_9/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_9/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_9/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_9/exdir.yaml           |    3 +
 .../channel_group_2/LFP/exdir.yaml            |    3 +
 .../UnitTimes/43/attributes.yaml              |    3 +
 .../channel_group_2/UnitTimes/43/exdir.yaml   |    3 +
 .../UnitTimes/43/times/attributes.yaml        |    1 +
 .../UnitTimes/43/times/data.npy               |    3 +
 .../UnitTimes/43/times/exdir.yaml             |    6 +
 .../UnitTimes/51/attributes.yaml              |    3 +
 .../channel_group_2/UnitTimes/51/exdir.yaml   |    3 +
 .../UnitTimes/51/times/attributes.yaml        |    1 +
 .../UnitTimes/51/times/data.npy               |    3 +
 .../UnitTimes/51/times/exdir.yaml             |    6 +
 .../channel_group_2/UnitTimes/exdir.yaml      |    3 +
 .../channel_group_2/attributes.yaml           |   18 +
 .../channel_group_2/exdir.yaml                |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
 .../Clustering/cluster_nums/exdir.yaml        |    3 +
 .../channel_group_3/Clustering/exdir.yaml     |    3 +
 .../Clustering/nums/attributes.yaml           |    1 +
 .../channel_group_3/Clustering/nums/data.npy  |    3 +
 .../Clustering/nums/exdir.yaml                |    3 +
 .../Clustering/timestamps/attributes.yaml     |    4 +
 .../Clustering/timestamps/data.npy            |    3 +
 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_3/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
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+            "channel_name": "TT  p110.0 n6",
+            "description": "Tetrode spike data source",
+            "identifier": "spikesource",
+            "source_channel_info": [
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 56
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 57
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 58
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 59
+              }
+            ]
+          },
+          {
+            "channel_name": "TT  p110.0 n7",
+            "description": "Tetrode spike data source",
+            "identifier": "spikesource",
+            "source_channel_info": [
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 60
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 61
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 62
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 63
+              }
+            ]
+          }
+        ]
+      }
+    ]
+  }
\ No newline at end of file
diff --git a/actions/1834-120319-2/data/main.exdir/acquisition/2/experiment1/recording1/sync_messages.txt b/actions/1834-120319-2/data/main.exdir/acquisition/2/experiment1/recording1/sync_messages.txt
new file mode 100755
index 000000000..962ee0acf
--- /dev/null
+++ b/actions/1834-120319-2/data/main.exdir/acquisition/2/experiment1/recording1/sync_messages.txt
@@ -0,0 +1,2 @@
+Software time: 738329@3604980Hz
+Processor: Rhythm FPGA Id: 100 subProcessor: 0 start time: 738304@30000Hz
diff --git a/actions/1834-120319-2/data/main.exdir/acquisition/2/settings.xml b/actions/1834-120319-2/data/main.exdir/acquisition/2/settings.xml
new file mode 100755
index 000000000..37faaaefe
--- /dev/null
+++ b/actions/1834-120319-2/data/main.exdir/acquisition/2/settings.xml
@@ -0,0 +1,3013 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<SETTINGS>
+  <INFO>
+    <VERSION>0.4.4.1</VERSION>
+    <PLUGIN_API_VERSION>5</PLUGIN_API_VERSION>
+    <DATE>12 Mar 2019 12:54:19</DATE>
+    <OS>Windows 7</OS>
+    <MACHINE>PK-FYS-029A</MACHINE>
+  </INFO>
+  <SIGNALCHAIN>
+    <PROCESSOR name="Sources/Rhythm FPGA" insertionPoint="1" pluginName="Rhythm FPGA"
+               pluginType="4" pluginIndex="1" libraryName="Rhythm FPGA" libraryVersion="1"
+               isSource="1" isSink="0" NodeId="100">
+      <CHANNEL_INFO>
+        <CHANNEL name="CH1" number="0" gain="0.19499999284744263"/>
+        <CHANNEL name="CH2" number="1" gain="0.19499999284744263"/>
+        <CHANNEL name="CH3" number="2" gain="0.19499999284744263"/>
+        <CHANNEL name="CH4" number="3" gain="0.19499999284744263"/>
+        <CHANNEL name="CH5" number="4" gain="0.19499999284744263"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
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+      <CHANNEL name="69" number="69">
+        <SELECTIONSTATE param="0" record="0" audio="0"/>
+      </CHANNEL>
+      <EVENTCHANNEL name="0" number="0"/>
+      <EDITOR isCollapsed="0" displayName="Rhythm FPGA" SampleRate="17" SampleRateString="30.0 kS/s"
+              LowCut="2.3104271762941795" HighCut="7603.7651218333704" ADCsOn="0"
+              AudioOutputL="-1" AudioOutputR="-1" NoiseSlicer="0" TTLFastSettle="1"
+              DAC_TTL="0" DAC_HPF="1" DSPOffset="1" DSPCutoffFreq="0.14571292570770725"
+              save_impedance_measurements="0" auto_measure_impedances="0" LEDs="1"
+              ClockDivideRatio="1">
+        <ADCRANGE Channel="0" Range="0"/>
+        <ADCRANGE Channel="1" Range="0"/>
+        <ADCRANGE Channel="2" Range="0"/>
+        <ADCRANGE Channel="3" Range="0"/>
+        <ADCRANGE Channel="4" Range="0"/>
+        <ADCRANGE Channel="5" Range="0"/>
+        <ADCRANGE Channel="6" Range="0"/>
+        <ADCRANGE Channel="7" Range="0"/>
+      </EDITOR>
+    </PROCESSOR>
+    <PROCESSOR name="Filters/Channel Map" insertionPoint="1" pluginName="Channel Map"
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+      </CHANNEL>
+      <EVENTCHANNEL name="0" number="0"/>
+      <EDITOR isCollapsed="0" displayName="Channel Map" Type="ChannelMappingEditor">
+        <SETTING Type="visibleChannels" Value="70"/>
+        <CHANNEL Number="0" Mapping="1" Reference="0" Enabled="1"/>
+        <CHANNEL Number="1" Mapping="2" Reference="0" Enabled="1"/>
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+exdir:
+   type: "group"
+   version: 1
diff --git a/actions/1834-120319-2/data/main.exdir/processing/tracking/exdir.yaml b/actions/1834-120319-2/data/main.exdir/processing/tracking/exdir.yaml
new file mode 100644
index 000000000..858635519
--- /dev/null
+++ b/actions/1834-120319-2/data/main.exdir/processing/tracking/exdir.yaml
@@ -0,0 +1,3 @@
+exdir:
+   type: "group"
+   version: 1
diff --git a/actions/1834-120319-2/messages/20190312T125526.yaml b/actions/1834-120319-2/messages/20190312T125526.yaml
new file mode 100755
index 000000000..8cbd3c1f7
--- /dev/null
+++ b/actions/1834-120319-2/messages/20190312T125526.yaml
@@ -0,0 +1,3 @@
+text: 'Bad channels: 9 '
+user: Charlotte
+datetime: '2019-03-12T12:55:26'
diff --git a/actions/1834-120319-2/modules/channel_group_location.yaml b/actions/1834-120319-2/modules/channel_group_location.yaml
new file mode 100644
index 000000000..28e852403
--- /dev/null
+++ b/actions/1834-120319-2/modules/channel_group_location.yaml
@@ -0,0 +1,8 @@
+0: mecl
+1: mecl
+2: mecl
+3: mecl
+4: mecr
+5: mecr
+6: mecr
+7: mecr
diff --git a/actions/1834-120319-2/modules/depth.yaml b/actions/1834-120319-2/modules/depth.yaml
new file mode 100644
index 000000000..4ef66aa85
--- /dev/null
+++ b/actions/1834-120319-2/modules/depth.yaml
@@ -0,0 +1,8 @@
+mecr:
+  probe_0:
+    value: '3050'
+    unit: um
+mecl:
+  probe_0:
+    value: '2750'
+    unit: um