From b882075f184c1f10c8833177665cd6d787bf41c6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Mikkel=20Elle=20Lepper=C3=B8d?= <lep.mik@gmail.com>
Date: Tue, 8 Oct 2019 15:47:22 +0200
Subject: [PATCH] auto commit actions/1849-010319-4

---
 actions/1849-010319-4/attributes.yaml         |   17 +
 .../Rhythm_FPGA-100.0/continuous.dat          |    3 +
 .../Rhythm_FPGA-100.0/timestamps.npy          |    3 +
 .../TEXT_group_1/channels.npy                 |    3 +
 .../TEXT_group_1/text.npy                     |    3 +
 .../TEXT_group_1/timestamps.npy               |    3 +
 .../TTL_1/channel_states.npy                  |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/channels.npy      |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/full_words.npy    |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/timestamps.npy    |    3 +
 .../Sync_Port-115.0/TTL_1/channel_states.npy  |    3 +
 .../events/Sync_Port-115.0/TTL_1/channels.npy |    3 +
 .../Sync_Port-115.0/TTL_1/full_words.npy      |    3 +
 .../Sync_Port-115.0/TTL_1/timestamps.npy      |    3 +
 .../BINARY_group_1/channels.npy               |    3 +
 .../BINARY_group_1/data_array.npy             |    3 +
 .../BINARY_group_1/metadata.npy               |    3 +
 .../BINARY_group_1/timestamps.npy             |    3 +
 .../BINARY_group_2/channels.npy               |    3 +
 .../BINARY_group_2/data_array.npy             |    3 +
 .../BINARY_group_2/metadata.npy               |    3 +
 .../BINARY_group_2/timestamps.npy             |    3 +
 .../spike_group_1/metadata.npy                |    3 +
 .../spike_group_1/spike_clusters.npy          |    3 +
 .../spike_group_1/spike_electrode_indices.npy |    3 +
 .../spike_group_1/spike_times.npy             |    3 +
 .../spike_group_1/spike_waveforms.npy         |    3 +
 .../4/experiment1/recording1/structure.oebin  |  686 ++++
 .../experiment1/recording1/sync_messages.txt  |    2 +
 .../main.exdir/acquisition/4/settings.xml     | 3012 +++++++++++++++++
 .../main.exdir/acquisition/attributes.yaml    |    2 +
 .../data/main.exdir/acquisition/exdir.yaml    |    3 +
 .../data/main.exdir/attributes.yaml           |    4 +
 .../data/main.exdir/epochs/exdir.yaml         |    3 +
 .../epochs/open-ephys-epochs/exdir.yaml       |    3 +
 .../rhythm_fpga_100/attributes.yaml           |    3 +
 .../rhythm_fpga_100/data/attributes.yaml      |    1 +
 .../rhythm_fpga_100/data/data.npy             |    3 +
 .../rhythm_fpga_100/data/exdir.yaml           |    3 +
 .../rhythm_fpga_100/durations/attributes.yaml |    2 +
 .../rhythm_fpga_100/durations/data.npy        |    3 +
 .../rhythm_fpga_100/durations/exdir.yaml      |    6 +
 .../rhythm_fpga_100/exdir.yaml                |    3 +
 .../timestamps/attributes.yaml                |    2 +
 .../rhythm_fpga_100/timestamps/data.npy       |    3 +
 .../rhythm_fpga_100/timestamps/exdir.yaml     |    6 +
 .../1849-010319-4/data/main.exdir/exdir.yaml  |    3 +
 .../data/main.exdir/general/exdir.yaml        |    3 +
 .../main.exdir/general/subject/exdir.yaml     |    3 +
 .../electrophysiology/attributes.yaml         |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
 .../Clustering/cluster_nums/exdir.yaml        |    3 +
 .../channel_group_0/Clustering/exdir.yaml     |    3 +
 .../Clustering/nums/attributes.yaml           |    1 +
 .../channel_group_0/Clustering/nums/data.npy  |    3 +
 .../Clustering/nums/exdir.yaml                |    3 +
 .../Clustering/timestamps/attributes.yaml     |    4 +
 .../Clustering/timestamps/data.npy            |    3 +
 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_0/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
 .../waveform_timeseries/data/attributes.yaml  |    7 +
 .../waveform_timeseries/data/data.npy         |    3 +
 .../waveform_timeseries/data/exdir.yaml       |    3 +
 .../waveform_timeseries/exdir.yaml            |    3 +
 .../timestamps/attributes.yaml                |    4 +
 .../waveform_timeseries/timestamps/data.npy   |    3 +
 .../waveform_timeseries/timestamps/exdir.yaml |    6 +
 .../LFP/LFP_timeseries_0/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_0/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_0/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_0/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_0/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_1/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_1/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_1/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_1/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_1/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_2/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_2/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_2/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_2/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_2/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_3/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_3/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_3/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_3/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_3/exdir.yaml           |    3 +
 .../channel_group_0/LFP/exdir.yaml            |    3 +
 .../UnitTimes/0/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/0/exdir.yaml    |    3 +
 .../UnitTimes/0/times/attributes.yaml         |    1 +
 .../UnitTimes/0/times/data.npy                |    3 +
 .../UnitTimes/0/times/exdir.yaml              |    6 +
 .../UnitTimes/1/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/1/exdir.yaml    |    3 +
 .../UnitTimes/1/times/attributes.yaml         |    1 +
 .../UnitTimes/1/times/data.npy                |    3 +
 .../UnitTimes/1/times/exdir.yaml              |    6 +
 .../UnitTimes/10/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/10/exdir.yaml   |    3 +
 .../UnitTimes/10/times/attributes.yaml        |    1 +
 .../UnitTimes/10/times/data.npy               |    3 +
 .../UnitTimes/10/times/exdir.yaml             |    6 +
 .../UnitTimes/11/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/11/exdir.yaml   |    3 +
 .../UnitTimes/11/times/attributes.yaml        |    1 +
 .../UnitTimes/11/times/data.npy               |    3 +
 .../UnitTimes/11/times/exdir.yaml             |    6 +
 .../UnitTimes/12/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/12/exdir.yaml   |    3 +
 .../UnitTimes/12/times/attributes.yaml        |    1 +
 .../UnitTimes/12/times/data.npy               |    3 +
 .../UnitTimes/12/times/exdir.yaml             |    6 +
 .../UnitTimes/13/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/13/exdir.yaml   |    3 +
 .../UnitTimes/13/times/attributes.yaml        |    1 +
 .../UnitTimes/13/times/data.npy               |    3 +
 .../UnitTimes/13/times/exdir.yaml             |    6 +
 .../UnitTimes/19/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/19/exdir.yaml   |    3 +
 .../UnitTimes/19/times/attributes.yaml        |    1 +
 .../UnitTimes/19/times/data.npy               |    3 +
 .../UnitTimes/19/times/exdir.yaml             |    6 +
 .../UnitTimes/2/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/2/exdir.yaml    |    3 +
 .../UnitTimes/2/times/attributes.yaml         |    1 +
 .../UnitTimes/2/times/data.npy                |    3 +
 .../UnitTimes/2/times/exdir.yaml              |    6 +
 .../UnitTimes/20/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/20/exdir.yaml   |    3 +
 .../UnitTimes/20/times/attributes.yaml        |    1 +
 .../UnitTimes/20/times/data.npy               |    3 +
 .../UnitTimes/20/times/exdir.yaml             |    6 +
 .../UnitTimes/27/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/27/exdir.yaml   |    3 +
 .../UnitTimes/27/times/attributes.yaml        |    1 +
 .../UnitTimes/27/times/data.npy               |    3 +
 .../UnitTimes/27/times/exdir.yaml             |    6 +
 .../UnitTimes/29/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/29/exdir.yaml   |    3 +
 .../UnitTimes/29/times/attributes.yaml        |    1 +
 .../UnitTimes/29/times/data.npy               |    3 +
 .../UnitTimes/29/times/exdir.yaml             |    6 +
 .../UnitTimes/3/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/3/exdir.yaml    |    3 +
 .../UnitTimes/3/times/attributes.yaml         |    1 +
 .../UnitTimes/3/times/data.npy                |    3 +
 .../UnitTimes/3/times/exdir.yaml              |    6 +
 .../UnitTimes/34/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/34/exdir.yaml   |    3 +
 .../UnitTimes/34/times/attributes.yaml        |    1 +
 .../UnitTimes/34/times/data.npy               |    3 +
 .../UnitTimes/34/times/exdir.yaml             |    6 +
 .../UnitTimes/35/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/35/exdir.yaml   |    3 +
 .../UnitTimes/35/times/attributes.yaml        |    1 +
 .../UnitTimes/35/times/data.npy               |    3 +
 .../UnitTimes/35/times/exdir.yaml             |    6 +
 .../UnitTimes/42/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/42/exdir.yaml   |    3 +
 .../UnitTimes/42/times/attributes.yaml        |    1 +
 .../UnitTimes/42/times/data.npy               |    3 +
 .../UnitTimes/42/times/exdir.yaml             |    6 +
 .../UnitTimes/43/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/43/exdir.yaml   |    3 +
 .../UnitTimes/43/times/attributes.yaml        |    1 +
 .../UnitTimes/43/times/data.npy               |    3 +
 .../UnitTimes/43/times/exdir.yaml             |    6 +
 .../UnitTimes/44/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/44/exdir.yaml   |    3 +
 .../UnitTimes/44/times/attributes.yaml        |    1 +
 .../UnitTimes/44/times/data.npy               |    3 +
 .../UnitTimes/44/times/exdir.yaml             |    6 +
 .../UnitTimes/47/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/47/exdir.yaml   |    3 +
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 .../UnitTimes/47/times/data.npy               |    3 +
 .../UnitTimes/47/times/exdir.yaml             |    6 +
 .../UnitTimes/5/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/5/exdir.yaml    |    3 +
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 .../UnitTimes/5/times/data.npy                |    3 +
 .../UnitTimes/5/times/exdir.yaml              |    6 +
 .../UnitTimes/51/attributes.yaml              |    3 +
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 .../UnitTimes/51/times/exdir.yaml             |    6 +
 .../UnitTimes/6/attributes.yaml               |    3 +
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 .../UnitTimes/6/times/attributes.yaml         |    1 +
 .../UnitTimes/6/times/data.npy                |    3 +
 .../UnitTimes/6/times/exdir.yaml              |    6 +
 .../UnitTimes/7/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/7/exdir.yaml    |    3 +
 .../UnitTimes/7/times/attributes.yaml         |    1 +
 .../UnitTimes/7/times/data.npy                |    3 +
 .../UnitTimes/7/times/exdir.yaml              |    6 +
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 .../UnitTimes/8/times/exdir.yaml              |    6 +
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 .../UnitTimes/9/times/data.npy                |    3 +
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 .../channel_group_0/UnitTimes/exdir.yaml      |    3 +
 .../channel_group_0/attributes.yaml           |   20 +
 .../channel_group_0/exdir.yaml                |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
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 .../channel_group_1/Clustering/nums/data.npy  |    3 +
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 .../Clustering/timestamps/attributes.yaml     |    4 +
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 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_1/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
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 .../waveform_timeseries/data/data.npy         |    3 +
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 .../LFP/LFP_timeseries_4/attributes.yaml      |   13 +
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+            "source_channel_info": [
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 60
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 61
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 62
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 63
+              }
+            ]
+          }
+        ]
+      }
+    ]
+  }
\ No newline at end of file
diff --git a/actions/1849-010319-4/data/main.exdir/acquisition/4/experiment1/recording1/sync_messages.txt b/actions/1849-010319-4/data/main.exdir/acquisition/4/experiment1/recording1/sync_messages.txt
new file mode 100755
index 000000000..0481ecfec
--- /dev/null
+++ b/actions/1849-010319-4/data/main.exdir/acquisition/4/experiment1/recording1/sync_messages.txt
@@ -0,0 +1,2 @@
+Software time: 1530138@3604980Hz
+Processor: Rhythm FPGA Id: 100 subProcessor: 0 start time: 1530112@30000Hz
diff --git a/actions/1849-010319-4/data/main.exdir/acquisition/4/settings.xml b/actions/1849-010319-4/data/main.exdir/acquisition/4/settings.xml
new file mode 100755
index 000000000..53c211a55
--- /dev/null
+++ b/actions/1849-010319-4/data/main.exdir/acquisition/4/settings.xml
@@ -0,0 +1,3012 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<SETTINGS>
+  <INFO>
+    <VERSION>0.4.4.1</VERSION>
+    <PLUGIN_API_VERSION>5</PLUGIN_API_VERSION>
+    <DATE>1 Mar 2019 11:58:53</DATE>
+    <OS>Windows 7</OS>
+    <MACHINE>PK-FYS-029A</MACHINE>
+  </INFO>
+  <SIGNALCHAIN>
+    <PROCESSOR name="Sources/Rhythm FPGA" insertionPoint="1" pluginName="Rhythm FPGA"
+               pluginType="4" pluginIndex="1" libraryName="Rhythm FPGA" libraryVersion="1"
+               isSource="1" isSink="0" NodeId="100">
+      <CHANNEL_INFO>
+        <CHANNEL name="CH1" number="0" gain="0.19499999284744263"/>
+        <CHANNEL name="CH2" number="1" gain="0.19499999284744263"/>
+        <CHANNEL name="CH3" number="2" gain="0.19499999284744263"/>
+        <CHANNEL name="CH4" number="3" gain="0.19499999284744263"/>
+        <CHANNEL name="CH5" number="4" gain="0.19499999284744263"/>
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+        <CHANNEL name="AUX1" number="64" gain="3.7400001019705087e-005"/>
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+      </CHANNEL_INFO>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
+      <CHANNEL name="1" number="1">
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
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+      <CHANNEL name="69" number="69">
+        <SELECTIONSTATE param="0" record="0" audio="0"/>
+      </CHANNEL>
+      <EVENTCHANNEL name="0" number="0"/>
+      <EDITOR isCollapsed="0" displayName="Rhythm FPGA" SampleRate="17" SampleRateString="30.0 kS/s"
+              LowCut="2.3104271762941795" HighCut="7603.7651218333704" ADCsOn="0"
+              AudioOutputL="-1" AudioOutputR="-1" NoiseSlicer="0" TTLFastSettle="1"
+              DAC_TTL="0" DAC_HPF="1" DSPOffset="1" DSPCutoffFreq="0.14571292570770725"
+              save_impedance_measurements="0" auto_measure_impedances="0" LEDs="1"
+              ClockDivideRatio="1">
+        <ADCRANGE Channel="0" Range="0"/>
+        <ADCRANGE Channel="1" Range="0"/>
+        <ADCRANGE Channel="2" Range="0"/>
+        <ADCRANGE Channel="3" Range="0"/>
+        <ADCRANGE Channel="4" Range="0"/>
+        <ADCRANGE Channel="5" Range="0"/>
+        <ADCRANGE Channel="6" Range="0"/>
+        <ADCRANGE Channel="7" Range="0"/>
+      </EDITOR>
+    </PROCESSOR>
+    <PROCESSOR name="Filters/Channel Map" insertionPoint="1" pluginName="Channel Map"
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+               isSource="0" isSink="0" NodeId="101">
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+      </CHANNEL>
+      <EVENTCHANNEL name="0" number="0"/>
+      <EDITOR isCollapsed="0" displayName="Channel Map" Type="ChannelMappingEditor">
+        <SETTING Type="visibleChannels" Value="70"/>
+        <CHANNEL Number="0" Mapping="1" Reference="0" Enabled="1"/>
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diff --git a/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_second_max_chan.tsv b/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_second_max_chan.tsv
new file mode 100644
index 000000000..e4cb623ca
--- /dev/null
+++ b/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_second_max_chan.tsv
@@ -0,0 +1,57 @@
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diff --git a/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/params.py b/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/params.py
new file mode 100644
index 000000000..b5c66c7ca
--- /dev/null
+++ b/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/params.py
@@ -0,0 +1,6 @@
+dat_path =r'/tmp/process_3057309/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/recording.dat'
+n_channels_dat = 31
+dtype = 'int16'
+offset = 0
+sample_rate = 30000.0
+hp_filtered = False
\ No newline at end of file
diff --git a/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/pc_feature_ind.npy b/actions/1849-010319-4/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/pc_feature_ind.npy
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diff --git a/actions/1849-010319-4/messages/20190313T093551.yaml b/actions/1849-010319-4/messages/20190313T093551.yaml
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+++ b/actions/1849-010319-4/messages/20190313T093551.yaml
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+text: bc t1 t2
+user: Mikkel Lepperød
+datetime: '2019-03-13T09:35:51'
diff --git a/actions/1849-010319-4/messages/20190320T092424.yaml b/actions/1849-010319-4/messages/20190320T092424.yaml
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+0: mecl
+1: mecl
+2: mecl
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+6: mecr
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index 000000000..b212479cf
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+++ b/actions/1849-010319-4/modules/depth.yaml
@@ -0,0 +1,8 @@
+mecr:
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