From a151c3a0e5edacb719dcc32b973965fd4353122e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Mikkel=20Elle=20Lepper=C3=B8d?= <lep.mik@gmail.com>
Date: Tue, 8 Oct 2019 15:57:50 +0200
Subject: [PATCH] auto commit actions/1849-270219-1

---
 actions/1849-270219-1/attributes.yaml         |   14 +
 .../Rhythm_FPGA-100.0/continuous.dat          |    3 +
 .../Rhythm_FPGA-100.0/timestamps.npy          |    3 +
 .../TEXT_group_1/channels.npy                 |    3 +
 .../TEXT_group_1/text.npy                     |    3 +
 .../TEXT_group_1/timestamps.npy               |    3 +
 .../TTL_1/channel_states.npy                  |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/channels.npy      |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/full_words.npy    |    3 +
 .../Rhythm_FPGA-100.0/TTL_1/timestamps.npy    |    3 +
 .../Sync_Port-115.0/TTL_1/channel_states.npy  |    3 +
 .../events/Sync_Port-115.0/TTL_1/channels.npy |    3 +
 .../Sync_Port-115.0/TTL_1/full_words.npy      |    3 +
 .../Sync_Port-115.0/TTL_1/timestamps.npy      |    3 +
 .../BINARY_group_1/channels.npy               |    3 +
 .../BINARY_group_1/data_array.npy             |    3 +
 .../BINARY_group_1/metadata.npy               |    3 +
 .../BINARY_group_1/timestamps.npy             |    3 +
 .../BINARY_group_2/channels.npy               |    3 +
 .../BINARY_group_2/data_array.npy             |    3 +
 .../BINARY_group_2/metadata.npy               |    3 +
 .../BINARY_group_2/timestamps.npy             |    3 +
 .../spike_group_1/metadata.npy                |    3 +
 .../spike_group_1/spike_clusters.npy          |    3 +
 .../spike_group_1/spike_electrode_indices.npy |    3 +
 .../spike_group_1/spike_times.npy             |    3 +
 .../spike_group_1/spike_waveforms.npy         |    3 +
 .../1/experiment1/recording1/structure.oebin  |  686 ++++
 .../experiment1/recording1/sync_messages.txt  |    2 +
 .../main.exdir/acquisition/1/settings.xml     | 3006 +++++++++++++++++
 .../main.exdir/acquisition/attributes.yaml    |    2 +
 .../data/main.exdir/acquisition/exdir.yaml    |    3 +
 .../data/main.exdir/attributes.yaml           |    3 +
 .../data/main.exdir/epochs/exdir.yaml         |    3 +
 .../1849-270219-1/data/main.exdir/exdir.yaml  |    3 +
 .../data/main.exdir/general/exdir.yaml        |    3 +
 .../main.exdir/general/subject/exdir.yaml     |    3 +
 .../electrophysiology/attributes.yaml         |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
 .../Clustering/cluster_nums/exdir.yaml        |    3 +
 .../channel_group_0/Clustering/exdir.yaml     |    3 +
 .../Clustering/nums/attributes.yaml           |    1 +
 .../channel_group_0/Clustering/nums/data.npy  |    3 +
 .../Clustering/nums/exdir.yaml                |    3 +
 .../Clustering/timestamps/attributes.yaml     |    4 +
 .../Clustering/timestamps/data.npy            |    3 +
 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_0/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
 .../waveform_timeseries/data/attributes.yaml  |    7 +
 .../waveform_timeseries/data/data.npy         |    3 +
 .../waveform_timeseries/data/exdir.yaml       |    3 +
 .../waveform_timeseries/exdir.yaml            |    3 +
 .../timestamps/attributes.yaml                |    4 +
 .../waveform_timeseries/timestamps/data.npy   |    3 +
 .../waveform_timeseries/timestamps/exdir.yaml |    6 +
 .../FeatureExtraction/attributes.yaml         |    4 +
 .../FeatureExtraction/data/attributes.yaml    |    4 +
 .../FeatureExtraction/data/data.npy           |    3 +
 .../FeatureExtraction/data/exdir.yaml         |    3 +
 .../FeatureExtraction/exdir.yaml              |    3 +
 .../FeatureExtraction/masks/data.npy          |    3 +
 .../FeatureExtraction/masks/exdir.yaml        |    3 +
 .../FeatureExtraction/timestamps/data.npy     |    3 +
 .../FeatureExtraction/timestamps/exdir.yaml   |    3 +
 .../LFP/LFP_timeseries_0/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_0/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_0/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_0/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_0/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_1/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_1/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_1/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_1/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_1/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_2/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_2/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_2/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_2/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_2/exdir.yaml           |    3 +
 .../LFP/LFP_timeseries_3/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_3/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_3/data/data.npy        |    3 +
 .../LFP/LFP_timeseries_3/data/exdir.yaml      |    3 +
 .../LFP/LFP_timeseries_3/exdir.yaml           |    3 +
 .../channel_group_0/LFP/exdir.yaml            |    3 +
 .../UnitTimes/0/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/0/exdir.yaml    |    3 +
 .../UnitTimes/0/times/attributes.yaml         |    1 +
 .../UnitTimes/0/times/data.npy                |    3 +
 .../UnitTimes/0/times/exdir.yaml              |    6 +
 .../UnitTimes/10/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/10/exdir.yaml   |    3 +
 .../UnitTimes/10/times/attributes.yaml        |    1 +
 .../UnitTimes/10/times/data.npy               |    3 +
 .../UnitTimes/10/times/exdir.yaml             |    6 +
 .../UnitTimes/11/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/11/exdir.yaml   |    3 +
 .../UnitTimes/11/times/attributes.yaml        |    1 +
 .../UnitTimes/11/times/data.npy               |    3 +
 .../UnitTimes/11/times/exdir.yaml             |    6 +
 .../UnitTimes/12/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/12/exdir.yaml   |    3 +
 .../UnitTimes/12/times/attributes.yaml        |    1 +
 .../UnitTimes/12/times/data.npy               |    3 +
 .../UnitTimes/12/times/exdir.yaml             |    6 +
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 .../channel_group_0/UnitTimes/17/exdir.yaml   |    3 +
 .../UnitTimes/17/times/attributes.yaml        |    1 +
 .../UnitTimes/17/times/data.npy               |    3 +
 .../UnitTimes/17/times/exdir.yaml             |    6 +
 .../UnitTimes/18/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/18/exdir.yaml   |    3 +
 .../UnitTimes/18/times/attributes.yaml        |    1 +
 .../UnitTimes/18/times/data.npy               |    3 +
 .../UnitTimes/18/times/exdir.yaml             |    6 +
 .../UnitTimes/19/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/19/exdir.yaml   |    3 +
 .../UnitTimes/19/times/attributes.yaml        |    1 +
 .../UnitTimes/19/times/data.npy               |    3 +
 .../UnitTimes/19/times/exdir.yaml             |    6 +
 .../UnitTimes/2/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/2/exdir.yaml    |    3 +
 .../UnitTimes/2/times/attributes.yaml         |    1 +
 .../UnitTimes/2/times/data.npy                |    3 +
 .../UnitTimes/2/times/exdir.yaml              |    6 +
 .../UnitTimes/25/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/25/exdir.yaml   |    3 +
 .../UnitTimes/25/times/attributes.yaml        |    1 +
 .../UnitTimes/25/times/data.npy               |    3 +
 .../UnitTimes/25/times/exdir.yaml             |    6 +
 .../UnitTimes/3/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/3/exdir.yaml    |    3 +
 .../UnitTimes/3/times/attributes.yaml         |    1 +
 .../UnitTimes/3/times/data.npy                |    3 +
 .../UnitTimes/3/times/exdir.yaml              |    6 +
 .../UnitTimes/30/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/30/exdir.yaml   |    3 +
 .../UnitTimes/30/times/attributes.yaml        |    1 +
 .../UnitTimes/30/times/data.npy               |    3 +
 .../UnitTimes/30/times/exdir.yaml             |    6 +
 .../UnitTimes/31/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/31/exdir.yaml   |    3 +
 .../UnitTimes/31/times/attributes.yaml        |    1 +
 .../UnitTimes/31/times/data.npy               |    3 +
 .../UnitTimes/31/times/exdir.yaml             |    6 +
 .../UnitTimes/35/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/35/exdir.yaml   |    3 +
 .../UnitTimes/35/times/attributes.yaml        |    1 +
 .../UnitTimes/35/times/data.npy               |    3 +
 .../UnitTimes/35/times/exdir.yaml             |    6 +
 .../UnitTimes/4/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/4/exdir.yaml    |    3 +
 .../UnitTimes/4/times/attributes.yaml         |    1 +
 .../UnitTimes/4/times/data.npy                |    3 +
 .../UnitTimes/4/times/exdir.yaml              |    6 +
 .../UnitTimes/5/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/5/exdir.yaml    |    3 +
 .../UnitTimes/5/times/attributes.yaml         |    1 +
 .../UnitTimes/5/times/data.npy                |    3 +
 .../UnitTimes/5/times/exdir.yaml              |    6 +
 .../UnitTimes/53/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/53/exdir.yaml   |    3 +
 .../UnitTimes/53/times/attributes.yaml        |    1 +
 .../UnitTimes/53/times/data.npy               |    3 +
 .../UnitTimes/53/times/exdir.yaml             |    6 +
 .../UnitTimes/55/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/55/exdir.yaml   |    3 +
 .../UnitTimes/55/times/attributes.yaml        |    1 +
 .../UnitTimes/55/times/data.npy               |    3 +
 .../UnitTimes/55/times/exdir.yaml             |    6 +
 .../UnitTimes/56/attributes.yaml              |    3 +
 .../channel_group_0/UnitTimes/56/exdir.yaml   |    3 +
 .../UnitTimes/56/times/attributes.yaml        |    1 +
 .../UnitTimes/56/times/data.npy               |    3 +
 .../UnitTimes/56/times/exdir.yaml             |    6 +
 .../UnitTimes/6/attributes.yaml               |    3 +
 .../channel_group_0/UnitTimes/6/exdir.yaml    |    3 +
 .../UnitTimes/6/times/attributes.yaml         |    1 +
 .../UnitTimes/6/times/data.npy                |    3 +
 .../UnitTimes/6/times/exdir.yaml              |    6 +
 .../channel_group_0/UnitTimes/exdir.yaml      |    3 +
 .../channel_group_0/attributes.yaml           |   20 +
 .../channel_group_0/exdir.yaml                |    3 +
 .../Clustering/cluster_nums/attributes.yaml   |    1 +
 .../Clustering/cluster_nums/data.npy          |    3 +
 .../Clustering/cluster_nums/exdir.yaml        |    3 +
 .../channel_group_1/Clustering/exdir.yaml     |    3 +
 .../Clustering/nums/attributes.yaml           |    1 +
 .../channel_group_1/Clustering/nums/data.npy  |    3 +
 .../Clustering/nums/exdir.yaml                |    3 +
 .../Clustering/timestamps/attributes.yaml     |    4 +
 .../Clustering/timestamps/data.npy            |    3 +
 .../Clustering/timestamps/exdir.yaml          |    6 +
 .../channel_group_1/EventWaveform/exdir.yaml  |    3 +
 .../waveform_timeseries/attributes.yaml       |    1 +
 .../waveform_timeseries/data/attributes.yaml  |    7 +
 .../waveform_timeseries/data/data.npy         |    3 +
 .../waveform_timeseries/data/exdir.yaml       |    3 +
 .../waveform_timeseries/exdir.yaml            |    3 +
 .../timestamps/attributes.yaml                |    4 +
 .../waveform_timeseries/timestamps/data.npy   |    3 +
 .../waveform_timeseries/timestamps/exdir.yaml |    6 +
 .../FeatureExtraction/attributes.yaml         |    5 +
 .../FeatureExtraction/data/attributes.yaml    |    4 +
 .../FeatureExtraction/data/data.npy           |    3 +
 .../FeatureExtraction/data/exdir.yaml         |    3 +
 .../FeatureExtraction/exdir.yaml              |    3 +
 .../FeatureExtraction/masks/data.npy          |    3 +
 .../FeatureExtraction/masks/exdir.yaml        |    3 +
 .../FeatureExtraction/timestamps/data.npy     |    3 +
 .../FeatureExtraction/timestamps/exdir.yaml   |    3 +
 .../LFP/LFP_timeseries_4/attributes.yaml      |   13 +
 .../LFP/LFP_timeseries_4/data/attributes.yaml |    6 +
 .../LFP/LFP_timeseries_4/data/data.npy        |    3 +
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+            "description": "Tetrode spike data source",
+            "identifier": "spikesource",
+            "source_channel_info": [
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 36
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 37
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 38
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 39
+              }
+            ]
+          },
+          {
+            "channel_name": "TT  p110.0 n6",
+            "description": "Tetrode spike data source",
+            "identifier": "spikesource",
+            "source_channel_info": [
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 56
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 57
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 58
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 59
+              }
+            ]
+          },
+          {
+            "channel_name": "TT  p110.0 n7",
+            "description": "Tetrode spike data source",
+            "identifier": "spikesource",
+            "source_channel_info": [
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 60
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 61
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 62
+              },
+              {
+                "source_processor_id": 100,
+                "source_processor_sub_idx": 0,
+                "source_processor_channel": 63
+              }
+            ]
+          }
+        ]
+      }
+    ]
+  }
\ No newline at end of file
diff --git a/actions/1849-270219-1/data/main.exdir/acquisition/1/experiment1/recording1/sync_messages.txt b/actions/1849-270219-1/data/main.exdir/acquisition/1/experiment1/recording1/sync_messages.txt
new file mode 100755
index 000000000..e23398a2c
--- /dev/null
+++ b/actions/1849-270219-1/data/main.exdir/acquisition/1/experiment1/recording1/sync_messages.txt
@@ -0,0 +1,2 @@
+Software time: 84514@3604980Hz
+Processor: Rhythm FPGA Id: 100 subProcessor: 0 start time: 84480@30000Hz
diff --git a/actions/1849-270219-1/data/main.exdir/acquisition/1/settings.xml b/actions/1849-270219-1/data/main.exdir/acquisition/1/settings.xml
new file mode 100755
index 000000000..33a7a1d6b
--- /dev/null
+++ b/actions/1849-270219-1/data/main.exdir/acquisition/1/settings.xml
@@ -0,0 +1,3006 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<SETTINGS>
+  <INFO>
+    <VERSION>0.4.4.1</VERSION>
+    <PLUGIN_API_VERSION>5</PLUGIN_API_VERSION>
+    <DATE>27 Feb 2019 12:06:03</DATE>
+    <OS>Windows 7</OS>
+    <MACHINE>PK-FYS-029A</MACHINE>
+  </INFO>
+  <SIGNALCHAIN>
+    <PROCESSOR name="Sources/Rhythm FPGA" insertionPoint="1" pluginName="Rhythm FPGA"
+               pluginType="4" pluginIndex="1" libraryName="Rhythm FPGA" libraryVersion="1"
+               isSource="1" isSink="0" NodeId="100">
+      <CHANNEL_INFO>
+        <CHANNEL name="CH1" number="0" gain="0.19499999284744263"/>
+        <CHANNEL name="CH2" number="1" gain="0.19499999284744263"/>
+        <CHANNEL name="CH3" number="2" gain="0.19499999284744263"/>
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+        <CHANNEL name="CH5" number="4" gain="0.19499999284744263"/>
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+      <CHANNEL name="0" number="0">
+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
+      <CHANNEL name="63" number="63">
+        <SELECTIONSTATE param="1" record="1" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
+      </CHANNEL>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
+      </CHANNEL>
+      <CHANNEL name="69" number="69">
+        <SELECTIONSTATE param="0" record="0" audio="0"/>
+      </CHANNEL>
+      <EVENTCHANNEL name="0" number="0"/>
+      <EDITOR isCollapsed="0" displayName="Rhythm FPGA" SampleRate="17" SampleRateString="30.0 kS/s"
+              LowCut="2.3104271762941795" HighCut="7603.7651218333704" ADCsOn="0"
+              AudioOutputL="-1" AudioOutputR="-1" NoiseSlicer="0" TTLFastSettle="1"
+              DAC_TTL="0" DAC_HPF="1" DSPOffset="1" DSPCutoffFreq="0.14571292570770725"
+              save_impedance_measurements="0" auto_measure_impedances="0" LEDs="1"
+              ClockDivideRatio="1">
+        <ADCRANGE Channel="0" Range="0"/>
+        <ADCRANGE Channel="1" Range="0"/>
+        <ADCRANGE Channel="2" Range="0"/>
+        <ADCRANGE Channel="3" Range="0"/>
+        <ADCRANGE Channel="4" Range="0"/>
+        <ADCRANGE Channel="5" Range="0"/>
+        <ADCRANGE Channel="6" Range="0"/>
+        <ADCRANGE Channel="7" Range="0"/>
+      </EDITOR>
+    </PROCESSOR>
+    <PROCESSOR name="Filters/Channel Map" insertionPoint="1" pluginName="Channel Map"
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+               isSource="0" isSink="0" NodeId="101">
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+        <SELECTIONSTATE param="0" record="0" audio="0"/>
+      </CHANNEL>
+      <EVENTCHANNEL name="0" number="0"/>
+      <EDITOR isCollapsed="0" displayName="Channel Map" Type="ChannelMappingEditor">
+        <SETTING Type="visibleChannels" Value="70"/>
+        <CHANNEL Number="0" Mapping="1" Reference="0" Enabled="1"/>
+        <CHANNEL Number="1" Mapping="2" Reference="0" Enabled="1"/>
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+        </ELECTRODE>
+      </SpikeSorter>
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+      </CHANNEL>
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+      <SPIKECHANNEL name="6" number="6"/>
+      <SPIKECHANNEL name="7" number="7"/>
+      <EDITOR isCollapsed="0" displayName="Spike Sorter" Type="Visualizer">
+        <TAB Active="1"/>
+        <WINDOW Active="0"/>
+      </EDITOR>
+    </PROCESSOR>
+    <PROCESSOR name="Sinks/Spike Viewer" insertionPoint="1" pluginName="Spike Viewer"
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+               libraryVersion="1" isSource="0" isSink="1" NodeId="111">
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+      <SPIKECHANNEL name="7" number="7"/>
+      <EDITOR isCollapsed="0" displayName="Spike Viewer" Type="Visualizer">
+        <TAB Active="1"/>
+        <WINDOW Active="0"/>
+        <SPIKEDISPLAY LockThresholds="0" InvertSpikes="0">
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+      <TrackingNode>
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+      <EVENTCHANNEL name="1" number="1"/>
+      <EDITOR isCollapsed="0" displayName="Tracking Port"/>
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+      </EDITOR>
+    </PROCESSOR>
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diff --git a/actions/1849-270219-1/messages/20190314T095919.yaml b/actions/1849-270219-1/messages/20190314T095919.yaml
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+user: Mikkel Lepperød
+datetime: '2019-03-14T09:59:19'
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