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stim response

This commit is contained in:
Mikkel Elle Lepperød 2019-10-10 11:44:14 +02:00
parent a15c1396c6
commit 7f044e9b5b
6 changed files with 15038 additions and 15027 deletions
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36
actions/stimulus-response/data/10-calculate-stimulus-response.html
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@ -13169,7 +13169,7 @@ div#notebook {
<div class="output_subarea output_stream output_stderr output_text"> <div class="output_subarea output_stream output_stderr output_text">
<pre>08:31:41 [I] klustakwik KlustaKwik2 version 0.2.6 <pre>11:36:02 [I] klustakwik KlustaKwik2 version 0.2.6
</pre> </pre>
</div> </div>
</div> </div>
@ -13315,13 +13315,13 @@ div#notebook {
<div id="c31390dc-9698-436d-ab2a-1cbc4a5a53d7"></div> <div id="ab435e8e-523b-4fd6-b6b5-8138ce4c2f14"></div>
<div class="output_subarea output_widget_view "> <div class="output_subarea output_widget_view ">
<script type="text/javascript"> <script type="text/javascript">
var element = $('#c31390dc-9698-436d-ab2a-1cbc4a5a53d7'); var element = $('#ab435e8e-523b-4fd6-b6b5-8138ce4c2f14');
</script> </script>
<script type="application/vnd.jupyter.widget-view+json"> <script type="application/vnd.jupyter.widget-view+json">
{"model_id": "d3f0400c75c745c789907bd763bf2833", "version_major": 2, "version_minor": 0} {"model_id": "476c31da67274b2396ed3f2ec54a8344", "version_major": 2, "version_minor": 0}
</script> </script>
</div> </div>
@ -13412,20 +13412,7 @@ var element = $('#c31390dc-9698-436d-ab2a-1cbc4a5a53d7');
<div class="prompt input_prompt">In&nbsp;[&nbsp;]:</div> <div class="prompt input_prompt">In&nbsp;[&nbsp;]:</div>
<div class="inner_cell"> <div class="inner_cell">
<div class="input_area"> <div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span><span class="n">stuff</span> <span class="o">=</span> <span class="p">{</span> <div class=" highlight hl-ipython3"><pre><span></span><span class="n">copy_tree</span><span class="p">(</span><span class="n">output</span><span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">action</span><span class="o">.</span><span class="n">data_path</span><span class="p">()))</span>
<span class="s2">&quot;figures&quot;</span><span class="p">:</span> <span class="s2">&quot;figures&quot;</span><span class="p">,</span>
<span class="c1"># &quot;statistics&quot;: &quot;statistics&quot;</span>
<span class="p">}</span>
<span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">stuff</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
<span class="n">action</span><span class="o">.</span><span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">value</span>
<span class="n">data_path</span> <span class="o">=</span> <span class="n">action</span><span class="o">.</span><span class="n">data_path</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
<span class="n">data_path</span><span class="o">.</span><span class="n">parent</span><span class="o">.</span><span class="n">mkdir</span><span class="p">(</span><span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">parents</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
<span class="n">source</span> <span class="o">=</span> <span class="n">output</span> <span class="o">/</span> <span class="n">value</span>
<span class="k">if</span> <span class="n">source</span><span class="o">.</span><span class="n">is_file</span><span class="p">():</span>
<span class="n">shutil</span><span class="o">.</span><span class="n">copy</span><span class="p">(</span><span class="n">source</span><span class="p">,</span> <span class="n">data_path</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">copy_tree</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">source</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">data_path</span><span class="p">))</span>
</pre></div> </pre></div>
</div> </div>
@ -13445,6 +13432,19 @@ var element = $('#c31390dc-9698-436d-ab2a-1cbc4a5a53d7');
</div> </div>
</div> </div>
</div>
<div class="cell border-box-sizing code_cell rendered">
<div class="input">
<div class="prompt input_prompt">In&nbsp;[&nbsp;]:</div>
<div class="inner_cell">
<div class="input_area">
<div class=" highlight hl-ipython3"><pre><span></span>
</pre></div>
</div>
</div>
</div>
</div> </div>
</div> </div>
</div> </div>

28
actions/stimulus-response/data/10-calculate-stimulus-response.ipynb
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@ -19,7 +19,7 @@
"name": "stderr", "name": "stderr",
"output_type": "stream", "output_type": "stream",
"text": [ "text": [
"08:31:41 [I] klustakwik KlustaKwik2 version 0.2.6\n" "11:36:02 [I] klustakwik KlustaKwik2 version 0.2.6\n"
] ]
} }
], ],
@ -148,12 +148,12 @@
{ {
"data": { "data": {
"application/vnd.jupyter.widget-view+json": { "application/vnd.jupyter.widget-view+json": {
"model_id": "d3f0400c75c745c789907bd763bf2833", "model_id": "476c31da67274b2396ed3f2ec54a8344",
"version_major": 2, "version_major": 2,
"version_minor": 0 "version_minor": 0
}, },
"text/plain": [ "text/plain": [
"HBox(children=(IntProgress(value=0, max=1281), HTML(value='')))" "HBox(children=(IntProgress(value=0, max=1298), HTML(value='')))"
] ]
}, },
"metadata": {}, "metadata": {},
@ -230,20 +230,7 @@
"metadata": {}, "metadata": {},
"outputs": [], "outputs": [],
"source": [ "source": [
"stuff = {\n", "copy_tree(output, str(action.data_path()))"
" \"figures\": \"figures\",\n",
"# \"statistics\": \"statistics\"\n",
"}\n",
"\n",
"for key, value in stuff.items():\n",
" action.data[key] = value\n",
" data_path = action.data_path(key)\n",
" data_path.parent.mkdir(exist_ok=True, parents=True)\n",
" source = output / value\n",
" if source.is_file():\n",
" shutil.copy(source, data_path)\n",
" else:\n",
" copy_tree(str(source), str(data_path))"
] ]
}, },
{ {
@ -254,6 +241,13 @@
"source": [ "source": [
"septum_mec.analysis.registration.store_notebook(action, \"10-calculate-stimulus-response.ipynb\")" "septum_mec.analysis.registration.store_notebook(action, \"10-calculate-stimulus-response.ipynb\")"
] ]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
} }
], ],
"metadata": { "metadata": {

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actions/stimulus-response/data/figures/summary_histogram.png
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actions/stimulus-response/data/results.csv
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