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remove noise

This commit is contained in:
Mikkel Elle Lepperød 2019-10-17 18:11:15 +02:00
parent 5089987c58
commit 7228ab9e18
29 changed files with 35 additions and 51 deletions
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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/attributes.yaml
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num_samples: 20 num_samples: 19

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/attributes.yaml
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num_samples: 29331 num_samples: 29070

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/attributes.yaml
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unit: unit:
value: 1.0 value: 1.0
unit: "s" unit: "s"
num_samples: 29331 num_samples: 29070

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/attributes.yaml
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num_samples: 29331 num_samples: 29070
sample_rate: sample_rate:
value: 30000.0 value: 30000.0
unit: "Hz" unit: "Hz"

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/data.npy (Stored with Git LFS)
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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/attributes.yaml
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unit: unit:
value: 1.0 value: 1.0
unit: "s" unit: "s"
num_samples: 29331 num_samples: 29070

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/data.npy (Stored with Git LFS)
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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/attributes.yaml
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cluster_group: "unsorted"
group_id: "0"
name: "unit #72"

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/exdir.yaml
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exdir:
type: group
version: 1

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/attributes.yaml
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unit: "s"

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/data.npy (Stored with Git LFS)
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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/exdir.yaml
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exdir:
type: dataset
version: 1
plugins:
quantities:
required: true

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_1/Clustering/cluster_nums/attributes.yaml
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num_samples: 20 num_samples: 19

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_3/Clustering/cluster_nums/attributes.yaml
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num_samples: 20 num_samples: 19

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_3/Clustering/cluster_nums/data.npy (Stored with Git LFS)
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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_4/Clustering/cluster_nums/attributes.yaml
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num_samples: 20 num_samples: 19

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_5/Clustering/cluster_nums/attributes.yaml
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num_samples: 20 num_samples: 19

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/cluster_nums/attributes.yaml
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num_samples: 20 num_samples: 19

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/cluster_nums/attributes.yaml
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num_samples: 20 num_samples: 19

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/cluster_nums/data.npy (Stored with Git LFS)
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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_group.tsv
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@ -61,7 +61,7 @@ cluster_id group
64 noise 64 noise
65 noise 65 noise
66 unsorted 66 unsorted
72 unsorted 72 noise
73 noise 73 noise
75 noise 75 noise
76 unsorted 76 unsorted

1 cluster_id group
61 64 noise
62 65 noise
63 66 unsorted
64 72 unsorted noise
65 73 noise
66 75 noise
67 76 unsorted

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actions/1834-010319-3/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_info.tsv
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@ -61,7 +61,7 @@ id amplitude chan_grp channel depth firing_rate group n_spikes sec_channel
64 83.96745300 1 4 4 0.1 spk/s noise 73 2 64 83.96745300 1 4 4 0.1 spk/s noise 73 2
65 302.86090088 0 0 0 5.0 spk/s noise 4537 0 65 302.86090088 0 0 0 5.0 spk/s noise 4537 0
66 59.57538605 4 15 15 5.5 spk/s unsorted 4931 3 66 59.57538605 4 15 15 5.5 spk/s unsorted 4931 3
72 40.70115662 0 0 0 0.3 spk/s unsorted 261 0 72 40.70115662 0 0 0 0.3 spk/s noise 261 0
73 178.08264160 3 11 11 0.0 spk/s noise 11 3 73 178.08264160 3 11 11 0.0 spk/s noise 11 3
75 178.08264160 3 11 11 0.0 spk/s noise 2 3 75 178.08264160 3 11 11 0.0 spk/s noise 2 3
76 178.08264160 3 11 11 0.6 spk/s unsorted 516 3 76 178.08264160 3 11 11 0.6 spk/s unsorted 516 3

1 id amplitude chan_grp channel depth firing_rate group n_spikes sec_channel
61 64 83.96745300 1 4 4 0.1 spk/s noise 73 2
62 65 302.86090088 0 0 0 5.0 spk/s noise 4537 0
63 66 59.57538605 4 15 15 5.5 spk/s unsorted 4931 3
64 72 40.70115662 0 0 0 0.3 spk/s unsorted noise 261 0
65 73 178.08264160 3 11 11 0.0 spk/s noise 11 3
66 75 178.08264160 3 11 11 0.0 spk/s noise 2 3
67 76 178.08264160 3 11 11 0.6 spk/s unsorted 516 3