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b/actions/1834-060319-1/data/main.exdir/acquisition/attributes.yaml @@ -0,0 +1,2 @@ +acquisition_system: "Rhythm FPGA" +session: "1" diff --git a/actions/1834-060319-1/data/main.exdir/acquisition/exdir.yaml b/actions/1834-060319-1/data/main.exdir/acquisition/exdir.yaml new file mode 100755 index 000000000..16095b868 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/acquisition/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + version: 1 + type: group diff --git a/actions/1834-060319-1/data/main.exdir/attributes.yaml b/actions/1834-060319-1/data/main.exdir/attributes.yaml new file mode 100755 index 000000000..6e8baa320 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/attributes.yaml @@ -0,0 +1,3 @@ +session_duration: + value: 564.8128 + unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/epochs/exdir.yaml b/actions/1834-060319-1/data/main.exdir/epochs/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/epochs/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/exdir.yaml b/actions/1834-060319-1/data/main.exdir/exdir.yaml new file mode 100755 index 000000000..5f7f91955 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: file + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/general/exdir.yaml b/actions/1834-060319-1/data/main.exdir/general/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/general/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/general/subject/exdir.yaml b/actions/1834-060319-1/data/main.exdir/general/subject/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/general/subject/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/attributes.yaml new file mode 100755 index 000000000..35fb38422 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/attributes.yaml @@ -0,0 +1,30 @@ +spike_sorting: + name: "klusta" + params: + adjacency_radius: "10" + detect_sign: -1 + extract_s_after: 32 + extract_s_before: 16 + file_name: + n_features_per_channel: 3 + num_starting_clusters: 50 + pca_n_waveforms_max: 10000 + probe_file: + threshold_strong_std_factor: 5 + threshold_weak_std_factor: 2 +filter: + hp_filter: + low: 300 + high: 3000 + lfp_filter: + low: 1 + high: 300 + resample: 1000 + mua_filter: + resample: 1000 +reference: + type: "cmr" + split: "half" +sample_rate: + value: 30000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/attributes.yaml new file mode 100644 index 000000000..196445728 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/attributes.yaml @@ -0,0 +1 @@ +num_samples: 15 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/data.npy new file mode 100644 index 000000000..74d22cd61 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:99a859890fd33f0db8cfe731fc585373a7831c08ff9ecae32cb5c2bf84f359ee +size 188 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/exdir.yaml new file mode 100644 index 000000000..d1b90af4b --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/cluster_nums/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/exdir.yaml new file mode 100644 index 000000000..ec0339b8f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/attributes.yaml new file mode 100644 index 000000000..c889cba6d --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/attributes.yaml @@ -0,0 +1 @@ +num_samples: 18004 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/data.npy new file mode 100644 index 000000000..57d81b368 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:669d0a5d38a1f4b4fd26e9d0ed9399bf3bddf32530fbca12a0efbdf3b5a40172 +size 144160 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/exdir.yaml new file mode 100644 index 000000000..d1b90af4b --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/nums/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/attributes.yaml new file mode 100644 index 000000000..182f77baa --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/attributes.yaml @@ -0,0 +1,4 @@ +unit: + value: 1.0 + unit: "s" +num_samples: 18004 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/data.npy new file mode 100644 index 000000000..e4aecb2a0 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f1c6c3a9f418dd15834071558136819ab39335fdfdd35d2daf049d788eb26b4b +size 144160 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/exdir.yaml new file mode 100644 index 000000000..e4cd26f9a --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/Clustering/timestamps/exdir.yaml @@ -0,0 +1,6 @@ +exdir: + type: dataset + version: 1 +plugins: + quantities: + required: true diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/exdir.yaml new file mode 100644 index 000000000..ec0339b8f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/attributes.yaml new file mode 100644 index 000000000..3b0df7b92 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/attributes.yaml @@ -0,0 +1 @@ +electrode_group_id: "0" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/attributes.yaml new file mode 100644 index 000000000..c21f2cb24 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/attributes.yaml @@ -0,0 +1,7 @@ +num_samples: 18004 +sample_rate: + value: 30000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "dimensionless" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/data.npy new file mode 100644 index 000000000..a0519cdfb --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e3289a90bd700e8fcf813ff23aba509625460100c7ed94f949344768e7ea2fbe +size 43209728 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/exdir.yaml new file mode 100644 index 000000000..d1b90af4b --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/attributes.yaml new file mode 100644 index 000000000..182f77baa --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/attributes.yaml @@ -0,0 +1,4 @@ +unit: + value: 1.0 + unit: "s" +num_samples: 18004 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/data.npy new file mode 100644 index 000000000..e4aecb2a0 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f1c6c3a9f418dd15834071558136819ab39335fdfdd35d2daf049d788eb26b4b +size 144160 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/exdir.yaml new file mode 100644 index 000000000..e4cd26f9a --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/EventWaveform/waveform_timeseries/timestamps/exdir.yaml @@ -0,0 +1,6 @@ +exdir: + type: dataset + version: 1 +plugins: + quantities: + required: true diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/attributes.yaml new file mode 100755 index 000000000..b63c19dc6 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/attributes.yaml @@ -0,0 +1,5 @@ +electrode_idx: +- 0 +- 1 +- 2 +- 3 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/data/attributes.yaml new file mode 100755 index 000000000..cc233a801 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/data/attributes.yaml @@ -0,0 +1,4 @@ +num_samples: 97554 +feature_type: pca +num_features: 3 +num_channels: 4 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/FeatureExtraction/data/data.npy new file mode 100755 index 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_0/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_0/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_0/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_0/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/attributes.yaml new file mode 100755 index 000000000..4ed283cb6 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 0 +electrode_identity: 1 +num_samples: 564813 +electrode_idx: 1 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_1/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/attributes.yaml new file mode 100755 index 000000000..a9dbbea95 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 0 +electrode_identity: 2 +num_samples: 564813 +electrode_idx: 2 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_2/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/attributes.yaml new file mode 100755 index 000000000..0b540ba95 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 0 +electrode_identity: 3 +num_samples: 564813 +electrode_idx: 3 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/LFP_timeseries_3/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/LFP/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/attributes.yaml new file mode 100644 index 000000000..461617a55 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "0" +name: "unit #7" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/7/times/data.npy new file mode 100644 index 000000000..b1424c301 --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/attributes.yaml new file mode 100644 index 000000000..3746d5cda --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "0" +name: "unit #70" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/times/data.npy new file mode 100644 index 000000000..0eef0e025 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/70/times/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e58b977654ae9779d65acf02ad4009d3b64e76ca06c0d442136e6143e41c56fb +size 3376 diff --git 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diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/71/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/71/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/71/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/71/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/71/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/71/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git 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type: dataset + version: 1 +plugins: + quantities: + required: true diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/attributes.yaml new file mode 100644 index 000000000..41b78f677 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "0" +name: "unit #72" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/data.npy new file mode 100644 index 000000000..fff45df14 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/72/times/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid 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--- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/73/times/exdir.yaml @@ -0,0 +1,6 @@ +exdir: + type: dataset + version: 1 +plugins: + quantities: + required: true diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/attributes.yaml new file mode 100644 index 000000000..972587999 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "0" +name: "unit #74" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/74/times/data.npy new file mode 100644 index 000000000..bec3b9781 --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/attributes.yaml new file mode 100644 index 000000000..448293b68 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "0" +name: "unit #79" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/times/data.npy new file mode 100644 index 000000000..9dc01eca3 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/UnitTimes/79/times/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:f12f8b74d63048082dc8c94e06cfb5872c0df2b2f28759bf3939071893506626 +size 17104 diff --git 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a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/attributes.yaml new file mode 100755 index 000000000..ffabc6ba6 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/attributes.yaml @@ -0,0 +1,20 @@ +stop_time: + value: 564.813 + unit: "s" +start_time: + value: 0.0 + unit: "s" +electrode_identities: +- 0 +- 1 +- 2 +- 3 +electrode_group_id: 0 +electrode_idx: +- 0 +- 1 +- 2 +- 3 +sample_rate: + value: 30000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/exdir.yaml new file mode 100755 index 000000000..d794792eb --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_0/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + version: 1 + type: group diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/attributes.yaml new file mode 100755 index 000000000..17a5a5c7b --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/attributes.yaml @@ -0,0 +1,5 @@ +electrode_idx: +- 4 +- 5 +- 6 +- 7 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/attributes.yaml new file mode 100755 index 000000000..fd286e195 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/attributes.yaml @@ -0,0 +1,4 @@ +feature_type: pca +num_channels: 4 +num_samples: 22142 +num_features: 3 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/data.npy new file mode 100755 index 000000000..eedf2d1b2 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:a9d7868c91f7c2a98d109b0f487dd387c3883f8738c3317fd52971c4f8c266d5 +size 2125760 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/exdir.yaml new file mode 100755 index 000000000..f586913d9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "dataset" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/masks/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/FeatureExtraction/masks/data.npy new file mode 100755 index 000000000..f776c1a2f --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/data/data.npy new file mode 100755 index 000000000..25fbf40f6 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b44e31307340ee9261c44944fbe56cb013d17d27d58471a1bd5cf7bf9f3bc6d6 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_4/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/attributes.yaml new file mode 100755 index 000000000..98233e653 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 1 +electrode_identity: 5 +num_samples: 564813 +electrode_idx: 5 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/data/attributes.yaml @@ -0,0 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_5/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/attributes.yaml new file mode 100755 index 000000000..b4fa84db5 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 1 +electrode_identity: 6 +num_samples: 564813 +electrode_idx: 6 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/data.npy new file mode 100755 index 000000000..605f6e7f5 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:820213f9c6e03999a1ded45f442188a1351096807c23a6dd5f1a31ae78e6b065 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_6/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/attributes.yaml new file mode 100755 index 000000000..5e555d42b --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 1 +electrode_identity: 7 +num_samples: 564813 +electrode_idx: 7 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/data.npy new file mode 100755 index 000000000..7e3bdbf98 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:c970ebf11df11784ce2c638e3c2c3cb9a91d5c22b83f07277c22ac4af624fe30 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/LFP_timeseries_7/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/LFP/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/attributes.yaml new file mode 100755 index 000000000..0351bbb64 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/attributes.yaml @@ -0,0 +1,17 @@ +stop_time: + value: 564.813 + unit: "s" +electrode_identities: +- 4 +- 5 +- 6 +- 7 +electrode_group_id: 1 +electrode_idx: +- 4 +- 5 +- 6 +- 7 +start_time: + value: 0.0 + unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_1/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/attributes.yaml new file mode 100755 index 000000000..ddb95e083 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/attributes.yaml @@ -0,0 +1,5 @@ +electrode_idx: +- 8 +- 9 +- 10 +- 11 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/data/attributes.yaml new file mode 100755 index 000000000..a9e657e21 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/data/attributes.yaml @@ -0,0 +1,4 @@ +num_channels: 4 +num_samples: 27785 +num_features: 3 +feature_type: pca diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/data/data.npy new file mode 100755 index 000000000..94b231cd5 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:8d1ce68b94d7ed04fdfd5214fd0928095a49fd5b4d073a55e7ead6e81ab1a304 +size 2667488 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/data/exdir.yaml 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/masks/data.npy new file mode 100755 index 000000000..007bbf449 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/masks/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5d8b2604825001e700531403f3f611629709278c8e30e247f15f3a1dec927b30 +size 889248 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/masks/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/masks/exdir.yaml new file mode 100755 index 000000000..f586913d9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/masks/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "dataset" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/timestamps/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/timestamps/data.npy new file mode 100755 index 000000000..391bbf869 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/timestamps/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0dd356302ec002d49bcae6af9eac09b75c45a9eacefd1e3dd6510ae20960f70a +size 222408 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/timestamps/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/timestamps/exdir.yaml new file mode 100755 index 000000000..f586913d9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/FeatureExtraction/timestamps/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "dataset" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/attributes.yaml new file mode 100755 index 000000000..88d5d1162 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 2 +electrode_identity: 10 +num_samples: 564813 +electrode_idx: 9 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/data/data.npy new file mode 100755 index 000000000..269bbb6eb --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_10/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4b37ba9b4cdf00425e0e453456d717ccf215480e8857b38c14caadcee08edc41 +size 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a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/attributes.yaml new file mode 100755 index 000000000..77398236c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 2 +electrode_identity: 11 +num_samples: 564813 +electrode_idx: 10 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/data/data.npy new file mode 100755 index 000000000..0e29a4868 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:2d33e5268a2467c8217c9c542810cecb7c7c8d42c65acb2adac21b902f45e8f3 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_11/data/exdir.yaml 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/attributes.yaml new file mode 100755 index 000000000..c6194a1d9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 2 +electrode_identity: 8 +num_samples: 564813 +electrode_idx: 8 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/data/attributes.yaml @@ -0,0 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_8/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/attributes.yaml new file mode 100755 index 000000000..8095554fa --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 2 +electrode_identity: 9 +num_samples: 564813 +electrode_idx: 8 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/LFP_timeseries_9/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/LFP/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/attributes.yaml new file mode 100755 index 000000000..8362bf91f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/attributes.yaml @@ -0,0 +1,15 @@ +electrode_identities: +- 9 +- 10 +- 11 +electrode_group_id: 2 +start_time: + value: 0.0 + unit: "s" +electrode_idx: +- 8 +- 9 +- 10 +stop_time: + value: 564.813 + unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_2/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_12/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_12/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_12/data/data.npy new file mode 100755 index 000000000..092bc1483 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_12/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:dc6b7c2f175690292d1bfb177fbc8a7fbbf8c21d522aba973911a7909cf6450b +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_12/data/exdir.yaml 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/attributes.yaml new file mode 100755 index 000000000..fc52b9ed4 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 3 +electrode_identity: 13 +num_samples: 564813 +electrode_idx: 12 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/data.npy new file mode 100755 index 000000000..1c7a9a875 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:21adc8392cf7068151a92dcbce789e7574b7d078881136554053b24b6d853a81 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_13/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 3 +electrode_identity: 14 +num_samples: 564813 +electrode_idx: 13 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_14/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/attributes.yaml new file mode 100755 index 000000000..ba35892f6 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 3 +electrode_identity: 15 +num_samples: 564813 +electrode_idx: 14 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/LFP_timeseries_15/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/LFP/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/33/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/33/attributes.yaml new file mode 100644 index 000000000..6b20bbb15 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/33/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "3" +name: "unit #33" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/33/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/33/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ 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+ type: dataset + version: 1 +plugins: + quantities: + required: true diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/exdir.yaml new file mode 100644 index 000000000..ec0339b8f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/UnitTimes/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/attributes.yaml new file mode 100755 index 000000000..afa36d2e6 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/attributes.yaml @@ -0,0 +1,20 @@ +start_time: + value: 0.0 + unit: "s" +electrode_idx: +- 11 +- 12 +- 13 +- 14 +electrode_identities: +- 12 +- 13 +- 14 +- 15 +electrode_group_id: 3 +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 30000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/exdir.yaml new file mode 100755 index 000000000..d794792eb --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_3/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + version: 1 + type: group diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/attributes.yaml new file mode 100755 index 000000000..78d5f0620 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/attributes.yaml @@ -0,0 +1,5 @@ +electrode_idx: +- 16 +- 17 +- 18 +- 19 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/data/attributes.yaml new file mode 100755 index 000000000..88f78d5c7 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/data/attributes.yaml @@ -0,0 +1,4 @@ +feature_type: pca +num_samples: 57377 +num_channels: 4 +num_features: 3 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/FeatureExtraction/data/data.npy new file mode 100755 index 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 4 +electrode_identity: 16 +num_samples: 564813 +electrode_idx: 15 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/data.npy new file mode 100755 index 000000000..ae1effca7 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:0088585eb2b81fb4debc429b2ef0370fdf36bea9f95ff09774be832d099b3547 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_16/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/attributes.yaml new file mode 100755 index 000000000..4bae3ad05 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 4 +electrode_identity: 17 +num_samples: 564813 +electrode_idx: 16 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_17/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/attributes.yaml new file mode 100755 index 000000000..06661bbb1 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 4 +electrode_identity: 18 +num_samples: 564813 +electrode_idx: 17 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_18/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_19/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_4/LFP/LFP_timeseries_19/attributes.yaml new file mode 100755 index 000000000..9748f43b3 --- /dev/null +++ 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a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/FeatureExtraction/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/FeatureExtraction/attributes.yaml new file mode 100755 index 000000000..b7dc33647 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/FeatureExtraction/attributes.yaml @@ -0,0 +1,5 @@ +electrode_idx: +- 20 +- 21 +- 22 +- 23 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/FeatureExtraction/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/FeatureExtraction/data/attributes.yaml new file mode 100755 index 000000000..6ee2b643d --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/FeatureExtraction/data/attributes.yaml @@ -0,0 +1,4 @@ +num_channels: 4 +num_samples: 27437 +num_features: 3 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/data/data.npy new file mode 100755 index 000000000..fbb5ca8ea --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:5e509d0de701919dca83df8b2cf480162022610cf07a1afc63b6c5f770fdd2fa +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_20/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/attributes.yaml new file mode 100755 index 000000000..d7d0478a0 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 5 +electrode_identity: 21 +num_samples: 564813 +electrode_idx: 20 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/data.npy new file mode 100755 index 000000000..baa0a5b91 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b24c513b0385468ccc694eba2a765ea9041154e00efac04addbef5f33e3de011 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_21/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 5 +electrode_identity: 22 +num_samples: 564813 +electrode_idx: 21 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_22/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/attributes.yaml new file mode 100755 index 000000000..04080004f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 5 +electrode_identity: 23 +num_samples: 564813 +electrode_idx: 22 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/LFP_timeseries_23/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/LFP/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/attributes.yaml new file mode 100644 index 000000000..ac4122c40 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "5" +name: "unit #87" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/87/times/data.npy new file mode 100644 index 000000000..7434b6ac8 --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/exdir.yaml new file mode 100644 index 000000000..ec0339b8f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/UnitTimes/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/attributes.yaml new file mode 100755 index 000000000..f20a4c6c4 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/attributes.yaml @@ -0,0 +1,20 @@ +electrode_identities: +- 20 +- 21 +- 22 +- 23 +electrode_group_id: 5 +stop_time: + value: 564.813 + unit: "s" +start_time: + value: 0.0 + unit: "s" +electrode_idx: +- 19 +- 20 +- 21 +- 22 +sample_rate: + value: 30000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/exdir.yaml new file mode 100755 index 000000000..d794792eb --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_5/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + version: 1 + type: group diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/cluster_nums/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/cluster_nums/attributes.yaml new file mode 100644 index 000000000..196445728 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/cluster_nums/attributes.yaml @@ -0,0 +1 @@ +num_samples: 15 diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/cluster_nums/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/exdir.yaml new file mode 100644 index 000000000..ec0339b8f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/nums/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/Clustering/nums/attributes.yaml new file mode 100644 index 000000000..90c7c3e54 --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/FeatureExtraction/timestamps/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "dataset" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_24/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_24/attributes.yaml new file mode 100755 index 000000000..3991d087b --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_24/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 6 +electrode_identity: 24 +num_samples: 564813 +electrode_idx: 23 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_24/data/attributes.yaml 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a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/attributes.yaml new file mode 100755 index 000000000..87bdc2e34 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 6 +electrode_identity: 25 +num_samples: 564813 +electrode_idx: 24 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/data/data.npy new file mode 100755 index 000000000..c239c6e84 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:4144739d5fbc6e545edacd0c6d1a46fd4d50a326e37ede6663a4715cd1cbb8c3 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_25/data/exdir.yaml 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/attributes.yaml new file mode 100755 index 000000000..27f59a2d6 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 6 +electrode_identity: 26 +num_samples: 564813 +electrode_idx: 25 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/data.npy new file mode 100755 index 000000000..236bdb613 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fbcb4031772bf2127e34a523e4a6d6139f51bb11f4b5fc22b8a7c42d83d7ebba +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_26/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 6 +electrode_identity: 27 +num_samples: 564813 +electrode_idx: 26 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/LFP_timeseries_27/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/LFP/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/attributes.yaml new file mode 100644 index 000000000..5e92be8ed --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "6" +name: "unit #55" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/55/times/data.npy new file mode 100644 index 000000000..1cab36574 --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/attributes.yaml new file mode 100644 index 000000000..edf323540 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "6" +name: "unit #58" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/times/data.npy new file mode 100644 index 000000000..43fb6637a --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/UnitTimes/58/times/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:96e4efc299fc19b2b03bf432c15d28597c69c12a75dedfe845885601486bf4e0 +size 233584 diff --git 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a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/attributes.yaml new file mode 100755 index 000000000..5cad76f80 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/attributes.yaml @@ -0,0 +1,20 @@ +electrode_idx: +- 23 +- 24 +- 25 +- 26 +electrode_group_id: 6 +stop_time: + value: 564.813 + unit: "s" +electrode_identities: +- 24 +- 25 +- 26 +- 27 +start_time: + value: 0.0 + unit: "s" +sample_rate: + value: 30000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/exdir.yaml new file mode 100755 index 000000000..d794792eb --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_6/exdir.yaml @@ -0,0 +1,3 @@ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/nums/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/nums/attributes.yaml new file mode 100644 index 000000000..bf7e8c7c4 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/nums/attributes.yaml @@ -0,0 +1 @@ +num_samples: 19848 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/nums/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/Clustering/nums/data.npy new file mode 100644 index 000000000..de644709b --- /dev/null +++ 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a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/EventWaveform/waveform_timeseries/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/EventWaveform/waveform_timeseries/attributes.yaml new file mode 100644 index 000000000..ec6c4bb20 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/EventWaveform/waveform_timeseries/attributes.yaml @@ -0,0 +1 @@ +electrode_group_id: "7" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/EventWaveform/waveform_timeseries/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/EventWaveform/waveform_timeseries/data/attributes.yaml new file mode 100644 index 000000000..e7c0ff2c9 --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_28/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_28/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_28/data/data.npy new file mode 100755 index 000000000..a2ee30b4c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_28/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:96fe66e1f31ba3b81cde7e6dea414a6e2348e3c8dd6bc89a588d9093fb028e11 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_28/data/exdir.yaml 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@@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_29/data/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_29/data/data.npy new file mode 100755 index 000000000..0fb58b70f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_29/data/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:b58499dd291c4d248c2936d355433f89b1ed27faa34ef2901c199fbbc0737379 +size 2259380 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_29/data/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_29/data/exdir.yaml new file mode 100755 index 000000000..f7d8c11f9 --- 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 7 +electrode_identity: 30 +num_samples: 564813 +electrode_idx: 29 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_30/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/attributes.yaml new file mode 100755 index 000000000..7b68b961f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/attributes.yaml @@ -0,0 +1,13 @@ +electrode_group_id: 7 +electrode_identity: 31 +num_samples: 564813 +electrode_idx: 30 +start_time: + value: 0.0 + unit: "s" +stop_time: + value: 564.813 + unit: "s" +sample_rate: + value: 1000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/data/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/data/attributes.yaml new file mode 100755 index 000000000..757bcd44c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/data/attributes.yaml @@ -0,0 +1,6 @@ +sample_rate: + value: 1000.0 + unit: "Hz" +unit: + value: 1.0 + unit: "uV" diff --git 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/data/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: dataset + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/exdir.yaml new file mode 100755 index 000000000..52382672f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/LFP_timeseries_31/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/exdir.yaml new file mode 100755 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/LFP/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/59/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/59/attributes.yaml new file mode 100644 index 000000000..bcd1d1101 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/59/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "7" +name: "unit #59" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/59/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/59/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/attributes.yaml new file mode 100644 index 000000000..d85b53471 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/attributes.yaml @@ -0,0 +1,3 @@ +cluster_group: "unsorted" +group_id: "7" +name: "unit #91" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/attributes.yaml new file mode 100644 index 000000000..805890c60 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/attributes.yaml @@ -0,0 +1 @@ +unit: "s" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/data.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/data.npy new file mode 100644 index 000000000..ccd45cef5 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/data.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:726334c9effa91933c2bd9df8102ffbc1ad4ff057ac7373aa293bb0a73ddd27c +size 72872 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/exdir.yaml new file mode 100644 index 000000000..e4cd26f9a --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/91/times/exdir.yaml @@ -0,0 +1,6 @@ +exdir: + type: dataset + version: 1 +plugins: + quantities: + required: true diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/exdir.yaml new file mode 100644 index 000000000..ec0339b8f --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/UnitTimes/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/attributes.yaml new file mode 100755 index 000000000..45ad76563 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/attributes.yaml @@ -0,0 +1,20 @@ +electrode_group_id: 7 +electrode_idx: +- 27 +- 28 +- 29 +- 30 +stop_time: + value: 564.813 + unit: "s" +start_time: + value: 0.0 + unit: "s" +electrode_identities: +- 28 +- 29 +- 30 +- 31 +sample_rate: + value: 30000.0 + unit: "Hz" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/exdir.yaml new file mode 100755 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/channel_group_7/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/exdir.yaml new file mode 100644 index 000000000..40c4a431c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: group + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/exdir.yaml new file mode 100644 index 000000000..858635519 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/attributes.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/attributes.yaml new file mode 100644 index 000000000..b81783f28 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/attributes.yaml @@ -0,0 +1,23 @@ +spike_sorting: + name: "kilosort2" + params: + car: false + detect_threshold: 5 + electrode_dimensions: + freq_min: 150 + minFR: 0.1 + nPCs: 3 + sigmaMask: 30 +filter: + hp_filter: + low: 300 + high: 3000 + lfp_filter: + low: 1 + high: 300 + resample: 1000 + mua_filter: + resample: 1000 +reference: + type: "cmr" + split: "half" diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/exdir.yaml b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/exdir.yaml new file mode 100644 index 000000000..52382672f --- /dev/null +++ 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sha256:04ce6a5d39b05e214b2d9bb65d95b9d7432a25f874cb1a1cffd127273a6ee06e +size 624 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_chan_grp.tsv b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_chan_grp.tsv new file mode 100644 index 000000000..9c534c79c --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_chan_grp.tsv @@ -0,0 +1,84 @@ +cluster_id chan_grp +1 3 +3 0 +4 0 +5 0 +6 0 +7 0 +8 0 +9 1 +10 4 +11 3 +12 0 +13 0 +14 0 +15 0 +16 0 +17 1 +18 0 +19 0 +20 2 +21 0 +22 0 +24 0 +25 1 +26 0 +27 0 +28 0 +29 4 +30 0 +31 0 +32 0 +33 3 +35 0 +36 0 +37 4 +38 3 +39 0 +40 0 +41 0 +42 4 +43 0 +44 2 +45 4 +46 0 +47 0 +48 3 +50 0 +51 4 +52 0 +53 4 +54 0 +55 6 +56 0 +57 6 +58 6 +59 7 +60 0 +62 0 +63 2 +64 4 +65 0 +66 4 +67 4 +68 2 +70 0 +71 0 +72 0 +73 0 +74 0 +75 3 +76 3 +79 0 +80 0 +81 0 +82 0 +85 3 +86 3 +87 5 +88 5 +91 7 +92 7 +94 3 +95 3 +96 3 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_group.tsv b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_group.tsv new file mode 100644 index 000000000..c30538f52 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_group.tsv @@ -0,0 +1,84 @@ +cluster_id group +1 noise +3 noise +4 noise +5 noise +6 noise +7 unsorted +8 noise +9 noise +10 noise +11 noise +12 noise +13 noise +14 noise +15 noise +16 noise +17 noise +18 noise +19 noise +20 noise +21 noise +22 noise +24 noise +25 noise +26 noise +27 noise +28 noise +29 noise +30 noise +31 noise +32 noise +33 unsorted +35 noise +36 noise +37 noise +38 noise +39 noise +40 noise +41 noise +42 noise +43 noise +44 noise +45 noise +46 noise +47 noise +48 noise +50 noise +51 noise +52 noise +53 noise +54 noise +55 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b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_sec_channel.tsv @@ -0,0 +1,84 @@ +cluster_id sec_channel +1 3 +3 3 +4 0 +5 0 +6 0 +7 1 +8 0 +9 2 +10 1 +11 3 +12 3 +13 0 +14 2 +15 0 +16 3 +17 0 +18 3 +19 3 +20 3 +21 0 +22 3 +24 1 +25 0 +26 3 +27 3 +28 3 +29 1 +30 0 +31 0 +32 3 +33 1 +35 1 +36 3 +37 0 +38 3 +39 3 +40 0 +41 3 +42 2 +43 0 +44 1 +45 0 +46 3 +47 3 +48 3 +50 1 +51 3 +52 0 +53 0 +54 3 +55 2 +56 1 +57 2 +58 2 +59 3 +60 3 +62 3 +63 0 +64 1 +65 3 +66 3 +67 3 +68 3 +70 3 +71 0 +72 0 +73 0 +74 0 +75 3 +76 3 +79 0 +80 0 +81 3 +82 3 +85 3 +86 3 +87 2 +88 2 +91 0 +92 0 +94 1 +95 1 +96 1 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_second_max_chan.tsv b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_second_max_chan.tsv new file mode 100644 index 000000000..b07ede454 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/cluster_second_max_chan.tsv @@ -0,0 +1,76 @@ +cluster_id sec_channel +0 3 +1 3 +2 0 +3 3 +4 0 +5 0 +6 0 +7 1 +8 0 +9 2 +10 1 +11 3 +12 3 +13 0 +14 2 +15 0 +16 3 +17 0 +18 3 +19 3 +20 3 +21 0 +22 3 +23 3 +24 1 +25 0 +26 3 +27 3 +28 3 +29 1 +30 0 +31 0 +32 3 +33 1 +34 3 +35 1 +36 3 +37 0 +38 3 +39 3 +40 0 +41 3 +42 2 +43 0 +44 1 +45 0 +46 3 +47 3 +48 3 +49 2 +50 1 +51 3 +52 0 +53 0 +54 3 +55 2 +56 1 +57 2 +58 2 +59 3 +60 3 +61 0 +62 3 +63 0 +64 1 +65 3 +66 3 +67 3 +68 3 +69 1 +70 3 +71 0 +72 0 +73 0 +74 0 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/params.py b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/params.py new file mode 100644 index 000000000..eeb515da2 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/params.py @@ -0,0 +1,6 @@ +dat_path = '/media/storage/expipe/septum-mec/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/recording.dat' +n_channels_dat = 31 +dtype = 'int16' +offset = 0 +sample_rate = 30000.0 +hp_filtered = False diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/pc_feature_ind.npy b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/pc_feature_ind.npy new file mode 100644 index 000000000..c6b1fe3d4 --- /dev/null +++ b/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/pc_feature_ind.npy @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e90352270f48f5abf0f8674306c186443cbb6d328597d44709d4b5e6cb15c8bc +size 18728 diff --git a/actions/1834-060319-1/data/main.exdir/processing/electrophysiology/spikesorting/kilosort2/phy/pc_features.npy 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b/actions/1834-060319-1/data/main.exdir/processing/tracking/exdir.yaml @@ -0,0 +1,3 @@ +exdir: + type: "group" + version: 1 diff --git a/actions/1834-060319-1/messages/20190313T085408.yaml b/actions/1834-060319-1/messages/20190313T085408.yaml new file mode 100644 index 000000000..e87d82794 --- /dev/null +++ b/actions/1834-060319-1/messages/20190313T085408.yaml @@ -0,0 +1,3 @@ +text: gc t0 +user: Mikkel Lepperød +datetime: '2019-03-13T08:54:08' diff --git a/actions/1834-060319-1/messages/20190319T100419.yaml b/actions/1834-060319-1/messages/20190319T100419.yaml new file mode 100644 index 000000000..1e20c5f67 --- /dev/null +++ b/actions/1834-060319-1/messages/20190319T100419.yaml @@ -0,0 +1,3 @@ +text: Laser = 7 +datetime: '2019-03-19T10:04:19' +user: Charlotte diff --git a/actions/1834-060319-1/messages/20190703T115115.yaml b/actions/1834-060319-1/messages/20190703T115115.yaml new file mode 100755 index 000000000..aa690d091 --- /dev/null +++ b/actions/1834-060319-1/messages/20190703T115115.yaml @@ -0,0 +1,3 @@ +text: Laser = 8 +user: Charlotte +datetime: '2019-07-03T11:51:15' diff --git a/actions/1834-060319-1/modules/channel_group_location.yaml b/actions/1834-060319-1/modules/channel_group_location.yaml new file mode 100644 index 000000000..28e852403 --- /dev/null +++ b/actions/1834-060319-1/modules/channel_group_location.yaml @@ -0,0 +1,8 @@ +0: mecl +1: mecl +2: mecl +3: mecl +4: mecr +5: mecr +6: mecr +7: mecr diff --git a/actions/1834-060319-1/modules/depth.yaml b/actions/1834-060319-1/modules/depth.yaml new file mode 100644 index 000000000..6b1cb3d54 --- /dev/null +++ b/actions/1834-060319-1/modules/depth.yaml @@ -0,0 +1,8 @@ +mecr: + probe_0: + unit: um + value: '2900' +mecl: + probe_0: + unit: um + value: '2750'