added data and notebooks

2020-09-17 13:29:37 +02:00 · 2020-09-17 13:29:37 +02:00 · 03a55b0547
parent f9c47d33fe
commit 03a55b0547
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--- a/20_phase-precession-rate.ipynb
+++ b/20_phase-precession-rate.ipynb
--- a/20_phase-precession.ipynb
+++ b/20_phase-precession.ipynb
--- a/hafting2008/.ipynb_checkpoints/readme_hafting2008-checkpoint.txt
+++ b/hafting2008/.ipynb_checkpoints/readme_hafting2008-checkpoint.txt
@ -0,0 +1,50 @@
+These cells are from layers II and III of medial entorhinal cortex and have  been published in Hafting et al. (Nature, 2008). 
+
+The files are in matlab format. They include spike and position times for a number of simultaneously recorded cells from rats that were running on a linear track (mostly 320 cm).
+The cells were recorded in the dorsocaudal 25% portion of the medial entorhinal cortex. 
+
+The cell id is based on tetrode number and cell number (i.e: t2c7).
+
+The EEG file is included to enable analyses of theta phase relationships etc.
+
+
+There are 3 file types available for each recording: EEG data, Position data and Spike data.
+
+The naming convention for the files is as follow
+
+Rat number - session number - file type (i.e: 11015-13120410_EEG)
+
+The spike data file has the cell id as the file type (i.e: 11015-13120410_t5c1).
+
+
+Each session duration is normally 10 minutes, but some sessions combine 2 or more 10 minutes sessions, this is marked in 
+the file name by using "+" between the session numbers (i.e: 11265-13030610+11+12+13_POS). Note that the 6 first digits in the session 
+number is the date of the recording. For some sessions there is more than 1 local EEG-signal (each from a different tetrode).
+
+When loading the files into Matlab you get the following variables:
+
+posx	Array with the x-positions for the tracking LED
+posy	Array with the y-positions for the tracking LED
+post	Array with the position timestamps.
+ts	Array with the cell spike timestamps.
+EEG	Array with the EEG-samples.
+
+The position data have been smoothed with a moving mean filter to remove tracking jitter.
+
+The EEG is sampled at 250 Hz, and the values are given in bits ranging from -128 to 127.
+High resolution EEG sampled at 4800hz included in subfolder
+
+All examples are shown in Supplementary Figures 2 and 3 in Hafting et al (2008).
+
+
+You can use the data for whatever you want but we take no responsibility for what is published!
+
+Please refer to our web site where you obtained the data in your Methods section when you write up the results.
+
+Best regards,
+Raymond Skjerpeng and Edvard Moser
+Kavli Institute for Systems Neuroscience
+Centre for the Biology of Memory
+Norwegian University of Science and Technology
+
+Correspondence: Edvard Moser (edvard.moser@ntnu.no)
--- a/hafting2008/11015-13120410+12_EEG.mat
+++ b/hafting2008/11015-13120410+12_EEG.mat
--- a/hafting2008/11015-13120410+12_POS.mat
+++ b/hafting2008/11015-13120410+12_POS.mat
--- a/hafting2008/11015-13120410+12_t5c1.mat
+++ b/hafting2008/11015-13120410+12_t5c1.mat
--- a/hafting2008/11265-13030610+11+12+13_EEG.mat
+++ b/hafting2008/11265-13030610+11+12+13_EEG.mat
--- a/hafting2008/11265-13030610+11+12+13_EG2.mat
+++ b/hafting2008/11265-13030610+11+12+13_EG2.mat
--- a/hafting2008/11265-13030610+11+12+13_POS.mat
+++ b/hafting2008/11265-13030610+11+12+13_POS.mat
--- a/hafting2008/11265-13030610+11+12+13_t5c1.mat
+++ b/hafting2008/11265-13030610+11+12+13_t5c1.mat
--- a/hafting2008/11265-13030610+11+12+13_t8c2.mat
+++ b/hafting2008/11265-13030610+11+12+13_t8c2.mat
--- a/hafting2008/11265-15020610+11_EEG.mat
+++ b/hafting2008/11265-15020610+11_EEG.mat
--- a/hafting2008/11265-15020610+11_POS.mat
+++ b/hafting2008/11265-15020610+11_POS.mat
--- a/hafting2008/11265-15020610+11_t3c2.mat
+++ b/hafting2008/11265-15020610+11_t3c2.mat
--- a/hafting2008/11265-15020610+11_t7c1.mat
+++ b/hafting2008/11265-15020610+11_t7c1.mat
--- a/hafting2008/11265-16030611+12_EEG.mat
+++ b/hafting2008/11265-16030611+12_EEG.mat
--- a/hafting2008/11265-16030611+12_EG2.mat
+++ b/hafting2008/11265-16030611+12_EG2.mat
--- a/hafting2008/11265-16030611+12_POS.mat
+++ b/hafting2008/11265-16030611+12_POS.mat
--- a/hafting2008/11265-16030611+12_t4c1.mat
+++ b/hafting2008/11265-16030611+12_t4c1.mat
--- a/hafting2008/11265-16030611+12_t4c2.mat
+++ b/hafting2008/11265-16030611+12_t4c2.mat
--- a/hafting2008/11265-16030611+12_t4c4.mat
+++ b/hafting2008/11265-16030611+12_t4c4.mat
--- a/hafting2008/11340-01120511+12+13_EEG.mat
+++ b/hafting2008/11340-01120511+12+13_EEG.mat
--- a/hafting2008/11340-01120511+12+13_EG2.mat
+++ b/hafting2008/11340-01120511+12+13_EG2.mat
--- a/hafting2008/11340-01120511+12+13_POS.mat
+++ b/hafting2008/11340-01120511+12+13_POS.mat
--- a/hafting2008/11340-01120511+12+13_t7c1.mat
+++ b/hafting2008/11340-01120511+12+13_t7c1.mat
--- a/hafting2008/11343-16120511+12_EEG.mat
+++ b/hafting2008/11343-16120511+12_EEG.mat
--- a/hafting2008/11343-16120511+12_EG2.mat
+++ b/hafting2008/11343-16120511+12_EG2.mat
--- a/hafting2008/11343-16120511+12_POS.mat
+++ b/hafting2008/11343-16120511+12_POS.mat
--- a/hafting2008/11343-16120511+12_t1c1.mat
+++ b/hafting2008/11343-16120511+12_t1c1.mat
--- a/hafting2008/11607-02110610+11+12_EEG.mat
+++ b/hafting2008/11607-02110610+11+12_EEG.mat
--- a/hafting2008/11607-02110610+11+12_EG2.mat
+++ b/hafting2008/11607-02110610+11+12_EG2.mat
--- a/hafting2008/11607-02110610+11+12_POS.mat
+++ b/hafting2008/11607-02110610+11+12_POS.mat
--- a/hafting2008/11607-02110610+11+12_t8c1.mat
+++ b/hafting2008/11607-02110610+11+12_t8c1.mat
--- a/hafting2008/11607-28110611+12_EEG.mat
+++ b/hafting2008/11607-28110611+12_EEG.mat
--- a/hafting2008/11607-28110611+12_EG2.mat
+++ b/hafting2008/11607-28110611+12_EG2.mat
--- a/hafting2008/11607-28110611+12_EG3.mat
+++ b/hafting2008/11607-28110611+12_EG3.mat
--- a/hafting2008/11607-28110611+12_EG4.mat
+++ b/hafting2008/11607-28110611+12_EG4.mat
--- a/hafting2008/11607-28110611+12_POS.mat
+++ b/hafting2008/11607-28110611+12_POS.mat
--- a/hafting2008/11607-28110611+12_t6c2.mat
+++ b/hafting2008/11607-28110611+12_t6c2.mat
--- a/hafting2008/11647-09010715_EEG.mat
+++ b/hafting2008/11647-09010715_EEG.mat
--- a/hafting2008/11647-09010715_EG2.mat
+++ b/hafting2008/11647-09010715_EG2.mat
--- a/hafting2008/11647-09010715_EG3.mat
+++ b/hafting2008/11647-09010715_EG3.mat
--- a/hafting2008/11647-09010715_EG4.mat
+++ b/hafting2008/11647-09010715_EG4.mat
--- a/hafting2008/11647-09010715_POS.mat
+++ b/hafting2008/11647-09010715_POS.mat
--- a/hafting2008/11647-09010715_t8c1.mat
+++ b/hafting2008/11647-09010715_t8c1.mat
--- a/hafting2008/11647-10010711_EEG.mat
+++ b/hafting2008/11647-10010711_EEG.mat
--- a/hafting2008/11647-10010711_EG2.mat
+++ b/hafting2008/11647-10010711_EG2.mat
--- a/hafting2008/11647-10010711_EG3.mat
+++ b/hafting2008/11647-10010711_EG3.mat
--- a/hafting2008/11647-10010711_EG4.mat
+++ b/hafting2008/11647-10010711_EG4.mat
--- a/hafting2008/11647-10010711_POS.mat
+++ b/hafting2008/11647-10010711_POS.mat
--- a/hafting2008/11647-10010711_t1c2.mat
+++ b/hafting2008/11647-10010711_t1c2.mat
--- a/hafting2008/11684-20020710_EG2.mat
+++ b/hafting2008/11684-20020710_EG2.mat
--- a/hafting2008/11684-20020710_EG3.mat
+++ b/hafting2008/11684-20020710_EG3.mat
--- a/hafting2008/11684-20020710_EG4.mat
+++ b/hafting2008/11684-20020710_EG4.mat
--- a/hafting2008/11684-20020710_POS.mat
+++ b/hafting2008/11684-20020710_POS.mat
--- a/hafting2008/11684-20020710_t5c1.mat
+++ b/hafting2008/11684-20020710_t5c1.mat
--- a/hafting2008/11684-20020710_t8c1.mat
+++ b/hafting2008/11684-20020710_t8c1.mat
--- a/hafting2008/C43035A4-5CC5-44F2-B207-126922523FD9_1.tar
+++ b/hafting2008/C43035A4-5CC5-44F2-B207-126922523FD9_1.tar
--- a/hafting2008/highres_eeg/01120511.EGF
+++ b/hafting2008/highres_eeg/01120511.EGF
--- a/hafting2008/highres_eeg/01120511.EGF.md5
+++ b/hafting2008/highres_eeg/01120511.EGF.md5
@ -0,0 +1 @@
+b41fd44322493d03db8b590269108fa4
--- a/hafting2008/highres_eeg/01120512.EGF
+++ b/hafting2008/highres_eeg/01120512.EGF
--- a/hafting2008/highres_eeg/01120512.EGF.md5
+++ b/hafting2008/highres_eeg/01120512.EGF.md5
@ -0,0 +1 @@
+08d27e699b1cb1c3936db8934796a19b
--- a/hafting2008/highres_eeg/01120513.EGF
+++ b/hafting2008/highres_eeg/01120513.EGF
--- a/hafting2008/highres_eeg/01120513.EGF.md5
+++ b/hafting2008/highres_eeg/01120513.EGF.md5
@ -0,0 +1 @@
+0e177676cbd946532665b30f49c14004
--- a/hafting2008/highres_eeg/10010711.ef2
+++ b/hafting2008/highres_eeg/10010711.ef2
--- a/hafting2008/highres_eeg/10010711.ef2.md5
+++ b/hafting2008/highres_eeg/10010711.ef2.md5
@ -0,0 +1 @@
+0668c76ebb01337d34dbdd83784d35e7
--- a/hafting2008/highres_eeg/10010711.ef3
+++ b/hafting2008/highres_eeg/10010711.ef3
--- a/hafting2008/highres_eeg/10010711.ef3.md5
+++ b/hafting2008/highres_eeg/10010711.ef3.md5
@ -0,0 +1 @@
+97dde9cab0d23593974341e483d0f4d9
--- a/hafting2008/highres_eeg/10010711.ef4
+++ b/hafting2008/highres_eeg/10010711.ef4
--- a/hafting2008/highres_eeg/10010711.ef4.md5
+++ b/hafting2008/highres_eeg/10010711.ef4.md5
@ -0,0 +1 @@
+7bd42c6648759a989e0941c665525a20
--- a/hafting2008/highres_eeg/10010711.egf
+++ b/hafting2008/highres_eeg/10010711.egf
--- a/hafting2008/highres_eeg/10010711.egf.md5
+++ b/hafting2008/highres_eeg/10010711.egf.md5
@ -0,0 +1 @@
+c2a3246e9a53570895e55b25aa020426
--- a/hafting2008/highres_eeg/13120410.EGF
+++ b/hafting2008/highres_eeg/13120410.EGF
--- a/hafting2008/highres_eeg/13120410.EGF.md5
+++ b/hafting2008/highres_eeg/13120410.EGF.md5
@ -0,0 +1 @@
+e52b816d1def7a016ee4de2d3a32a6f6
--- a/hafting2008/highres_eeg/13120412.EGF
+++ b/hafting2008/highres_eeg/13120412.EGF
--- a/hafting2008/highres_eeg/13120412.EGF.md5
+++ b/hafting2008/highres_eeg/13120412.EGF.md5
@ -0,0 +1 @@
+5465ffaa0d9721aa87525de61f83495c
--- a/hafting2008/highres_eeg/16030611.EGF
+++ b/hafting2008/highres_eeg/16030611.EGF
--- a/hafting2008/highres_eeg/16030611.EGF.md5
+++ b/hafting2008/highres_eeg/16030611.EGF.md5
@ -0,0 +1 @@
+f8119a7e6ec5e03bc11c3e88de0e6875
--- a/hafting2008/highres_eeg/16030612.EGF
+++ b/hafting2008/highres_eeg/16030612.EGF
--- a/hafting2008/highres_eeg/16030612.EGF.md5
+++ b/hafting2008/highres_eeg/16030612.EGF.md5
@ -0,0 +1 @@
+0aa2e05e4788ce009cbc671ef154c1df
--- a/hafting2008/highres_eeg/16120511.EGF
+++ b/hafting2008/highres_eeg/16120511.EGF
--- a/hafting2008/highres_eeg/16120511.EGF.md5
+++ b/hafting2008/highres_eeg/16120511.EGF.md5
@ -0,0 +1 @@
+993b8c44e850573f006d79eda3d1c07c
--- a/hafting2008/highres_eeg/16120512.EGF
+++ b/hafting2008/highres_eeg/16120512.EGF
--- a/hafting2008/highres_eeg/16120512.EGF.md5
+++ b/hafting2008/highres_eeg/16120512.EGF.md5
@ -0,0 +1 @@
+b982883c6a834ea73e7b6eb198a15530
--- a/hafting2008/md5sums/11015-13120410+12_EEG.mat.md5
+++ b/hafting2008/md5sums/11015-13120410+12_EEG.mat.md5
@ -0,0 +1 @@
+ba952f778414fa30eb774107a762d4b7
--- a/hafting2008/md5sums/11015-13120410+12_POS.mat.md5
+++ b/hafting2008/md5sums/11015-13120410+12_POS.mat.md5
@ -0,0 +1 @@
+bcb80f9785b66fe1ac495d1ceb711615
--- a/hafting2008/md5sums/11015-13120410+12_t5c1.mat.md5
+++ b/hafting2008/md5sums/11015-13120410+12_t5c1.mat.md5
@ -0,0 +1 @@
+5ed7165a06fcbd00b009de35e3ce7ade
--- a/hafting2008/md5sums/11265-13030610+11+12+13_EEG.mat.md5
+++ b/hafting2008/md5sums/11265-13030610+11+12+13_EEG.mat.md5
@ -0,0 +1 @@
+96d00760d4c274975725b78ad15cc3bf
--- a/hafting2008/md5sums/11265-13030610+11+12+13_EG2.mat.md5
+++ b/hafting2008/md5sums/11265-13030610+11+12+13_EG2.mat.md5
@ -0,0 +1 @@
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--- a/hafting2008/md5sums/11265-13030610+11+12+13_POS.mat.md5
+++ b/hafting2008/md5sums/11265-13030610+11+12+13_POS.mat.md5
@ -0,0 +1 @@
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--- a/hafting2008/md5sums/11265-13030610+11+12+13_t5c1.mat.md5
+++ b/hafting2008/md5sums/11265-13030610+11+12+13_t5c1.mat.md5
@ -0,0 +1 @@
+4c1d69eb7a0afb2d3c3b9d73879914e6
--- a/hafting2008/md5sums/11265-13030610+11+12+13_t8c2.mat.md5
+++ b/hafting2008/md5sums/11265-13030610+11+12+13_t8c2.mat.md5
@ -0,0 +1 @@
+366878eb15ac185a09812699c4c6242a
--- a/hafting2008/md5sums/11265-15020610+11_EEG.mat.md5
+++ b/hafting2008/md5sums/11265-15020610+11_EEG.mat.md5
@ -0,0 +1 @@
+945966c8900f56bad540bb6277d2245f
--- a/hafting2008/md5sums/11265-15020610+11_POS.mat.md5
+++ b/hafting2008/md5sums/11265-15020610+11_POS.mat.md5
@ -0,0 +1 @@
+c931e6f66f6f4ecc86858c58975518a4
--- a/hafting2008/md5sums/11265-15020610+11_t3c2.mat.md5
+++ b/hafting2008/md5sums/11265-15020610+11_t3c2.mat.md5
@ -0,0 +1 @@
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--- a/hafting2008/md5sums/11265-15020610+11_t7c1.mat.md5
+++ b/hafting2008/md5sums/11265-15020610+11_t7c1.mat.md5
@ -0,0 +1 @@
+6f0d4f2840b70cb717441e0326b34858
--- a/hafting2008/md5sums/11265-16030611+12_EEG.mat.md5
+++ b/hafting2008/md5sums/11265-16030611+12_EEG.mat.md5
@ -0,0 +1 @@
+8caff2bf684a368a9884f25dec953044
--- a/hafting2008/md5sums/11265-16030611+12_EG2.mat.md5
+++ b/hafting2008/md5sums/11265-16030611+12_EG2.mat.md5
@ -0,0 +1 @@
+b324d1fc466a8f647706d205136bd61a
--- a/hafting2008/md5sums/11265-16030611+12_POS.mat.md5
+++ b/hafting2008/md5sums/11265-16030611+12_POS.mat.md5
@ -0,0 +1 @@
+1822629ac6b79b6c3d9ca0e93c9c65f3
--- a/hafting2008/md5sums/11265-16030611+12_t4c1.mat.md5
+++ b/hafting2008/md5sums/11265-16030611+12_t4c1.mat.md5
@ -0,0 +1 @@
+3aa156b7ec89ee9f0d47ff1f6af04ac2
--- a/Show More
+++ b/Show More